README.md

Simulation

neural_assemblies.simulation contains runnable helpers for common assembly experiments and plots.

Exports

Export	Use it for
project_sim, project_beta_sim, assembly_only_sim	Projection and recurrence studies.
association_sim, association_grand_sim	Association experiments.
merge_sim, merge_beta_sim	Merge experiments.
pattern_com, pattern_com_repeated	Pattern completion experiments.
density, density_sim	Density and overlap experiments.
fixed_assembly_recip_proj, fixed_assembly_merge, separate	Structured assembly experiments.
larger_k, turing_erase	Exploratory Turing-style simulations.
plotting helpers	Figures for simulation runs.

Example

from neural_assemblies.simulation import merge_sim, project_sim

weights = project_sim(n=100_000, k=317, p=0.01, beta=0.05, t=50)
a_w, b_w, c_w = merge_sim(n=100_000, k=317, p=0.01, beta=0.05)

The Turing-style helpers are simulations. Cite the sequence-computation papers for theoretical claims.

See Also

• Research guide
• Scientific status