assemblies/CITATION.cff at master · Caerii/assemblies · GitHub

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cff-version: 1.2.0
message: >-
  If you use this software, cite it as below. Cite the assembly-calculus
  papers, not this package, for the theoretical results the package
  implements.
type: software
title: "Assemblies: a Python package and research workspace for the neural assembly calculus"
abstract: >-
  An implementation of the neural assembly calculus (sparse k-winner-take-all
  areas with Hebbian plasticity; projection, association, merge, sequence
  memory, inhibition, refraction) with numpy and hashed-CUDA engines, a
  pre-registered research record, and a register of measured results.
authors:
  - family-names: Jakir
    given-names: Alif
    orcid: "https://orcid.org/0009-0000-6337-5174"
    affiliation: Massachusetts Institute of Technology and Superintelligent Group
  - family-names: Mitropolsky
    given-names: Daniel
    affiliation: Massachusetts Institute of Technology
version: 0.0.1a1
date-released: "2026-09-09"
license: MIT
repository-code: "https://github.com/Caerii/assemblies"
url: "https://github.com/Caerii/assemblies"
keywords:
  - assembly calculus
  - neural assemblies
  - computational neuroscience
  - Hebbian plasticity
  - k-winner-take-all
  - NEMO
  - brain simulation
notes: >-
  Daniel Mitropolsky wrote the original library (2018 to 2019) from which this
  repository grew. Alif Jakir developed it into the present package, GPU
  substrate, and research record.
references:
  - type: article
    title: "Brain Computation by Assemblies of Neurons"
    authors:
      - family-names: Papadimitriou
        given-names: Christos H.
      - family-names: Vempala
        given-names: Santosh S.
      - family-names: Mitropolsky
        given-names: Daniel
      - family-names: Collins
        given-names: Michael
      - family-names: Maass
        given-names: Wolfgang
    journal: Proceedings of the National Academy of Sciences
    volume: 117
    issue: 25
    start: 14464
    end: 14472
    year: 2020
    doi: 10.1073/pnas.2001893117
  - type: article
    title: "Computation with Sequences of Assemblies in a Model of the Brain"
    authors:
      - family-names: Dabagia
        given-names: Max
      - family-names: Papadimitriou
        given-names: Christos H.
      - family-names: Vempala
        given-names: Santosh S.
    journal: Neural Computation
    volume: 37
    issue: 1
    start: 193
    end: 233
    year: 2025
    url: "https://arxiv.org/abs/2306.03812"
  - type: article
    title: "Simulated Language Acquisition in a Biologically Realistic Model of the Brain"
    authors:
      - family-names: Mitropolsky
        given-names: Daniel
      - family-names: Papadimitriou
        given-names: Christos H.
    year: 2025
    url: "https://arxiv.org/abs/2507.11788"