diff --git a/Data/aquifer_well/well_test_202509/COMPASS_TEMPEST_WellTest_TSS_Data.csv b/Data/aquifer_well/well_test_202509/COMPASS_TEMPEST_WellTest_TSS_Data.csv new file mode 100644 index 0000000..7d57ce7 --- /dev/null +++ b/Data/aquifer_well/well_test_202509/COMPASS_TEMPEST_WellTest_TSS_Data.csv @@ -0,0 +1,5 @@ +Sample_ID,Tin_ID,Tin_Weight_g,Tin_Filter_Weight_g,Tin_Filter_Sample_Weight_Dry_g,Tin_Filter_Sample_Weight_Dry1_g,Filtered_Volume_mL +TMP_FW_Well_1230,86,1.81022,1.99738,2.00113,2.00101,950 +TMP_FW_Well_1300,87,1.79589,1.98429,1.99866,1.99887,1105 +TMP_FW_Well_1400,88,1.74777,1.9464,1.95921,1.95923,1060 +DI_Blank,89,1.81108,2.00673,2.00571,2.00567,980 diff --git a/Data/aquifer_well/well_test_202509/TEMPEST_Aquifer_WellTest_202509_Data.Rmd b/Data/aquifer_well/well_test_202509/TEMPEST_Aquifer_WellTest_202509_Data.Rmd index fdaac81..1c7ed54 100644 --- a/Data/aquifer_well/well_test_202509/TEMPEST_Aquifer_WellTest_202509_Data.Rmd +++ b/Data/aquifer_well/well_test_202509/TEMPEST_Aquifer_WellTest_202509_Data.Rmd @@ -14,6 +14,9 @@ library(dplyr) library(plyr) library(tidyverse) library(tidyr) +library(lubridate) +library(knitr) +library(tibble) ``` ## Aquatroll (AQ600) Well Data @@ -28,33 +31,66 @@ colnames(well_dat) <- c("Date_Time","pH", "pH_mV" ,"ORP_mV", "DO_mgL", "DO_Sat", "Specific_Conductivity_µScm", "Salinity_psu", "Resistivity_Ωcm", "Density_gcm", "TDS_ppt", "Temp_C", "Voltage_V", "Battery", "Baro_Press_mmHg", "Press_psi" ,"Depth_cm" ) -#well_dat$Date_Time <- lubridate(well_dat$Date_Time) - #make date time actually a date and time with lubridate and remove extra data at the end +well_dat$Date_Time <- mdy_hm(well_dat$Date_Time) + +#remove data after aquatroll removed, remove salinity data lower than 0.001 and conductivity less than 1, +#remove DO over 1 which was when AQ600 removed from water and any TDS lower than 0.1 also from AQ600 removal +well_dat_filtered <- well_dat %>% + filter(Date_Time < ymd_hms("2025-09-04 13:30:00")) %>% + filter(Salinity_psu > 0.001) %>% + filter(Specific_Conductivity_µScm > 1) %>% + filter(DO_mgL < 1) %>% + filter(TDS_ppt > 0.10) + #plot Salinity sal <- ggplot()+ - geom_point(data=well_dat, aes(x=Date_Time, y=Salinity_psu), size=2)+ - ylim(0.07, 0.110) + + geom_point(data=well_dat_filtered, aes(x=Date_Time, y=Salinity_psu), size=2, color="blue")+ theme_bw()+ labs(x="Time", y="Salinity (psu)", title="Aquifer Salinity") + theme(legend.title = element_blank()) sal +#plot Conductivity +cond <- ggplot()+ + geom_point(data=well_dat_filtered, aes(x=Date_Time, y=Specific_Conductivity_µScm), size=2, color="darkblue")+ + theme_bw()+ labs(x="Time", y="Specific Conductivity (µScm)", title="Aquifer Conductivity") + theme(legend.title = element_blank()) +cond + #plot DO do <- ggplot()+ - geom_point(data=well_dat, aes(x=Date_Time, y=DO_mgL), size=2)+ - ylim(-0.10, 2) + + geom_point(data=well_dat_filtered, aes(x=Date_Time, y=DO_mgL), size=2, color="darkred")+ theme_bw()+ labs(x="Time", y="Dissolved Oxygen (mg/L)", title="Aquifer Dissolved Oxygen") + theme(legend.title = element_blank()) do #plot TDS tds <- ggplot()+ - geom_point(data=well_dat, aes(x=Date_Time, y=TDS_ppt), size=2)+ - ylim(0.10, 0.15) + + geom_point(data=well_dat_filtered, aes(x=Date_Time, y=TDS_ppt), size=2, color="darkgreen")+ theme_bw()+ labs(x="Time", y="Total Dissolved Solids (ppt))", title="Aquifer TDS") + theme(legend.title = element_blank()) tds +#create a table of average concentrations: +summary_stats <- well_dat_filtered %>% + summarise( + Salinity_psu_mean = mean(Salinity_psu, na.rm = TRUE), + Salinity_psu_sd = sd(Salinity_psu, na.rm = TRUE), + Sp_Conductivity_µScm_mean = mean(Specific_Conductivity_µScm, na.rm = TRUE), + Sp_Conductivity_µScm_sd = sd(Specific_Conductivity_µScm, na.rm = TRUE), + DO_mgL_mean = mean(DO_mgL, na.rm = TRUE), + DO_mgL_sd = sd(DO_mgL, na.rm = TRUE), + TDS_ppt_mean = mean(TDS_ppt, na.rm = TRUE), + TDS_ppt_sd = sd(TDS_ppt, na.rm = TRUE) + ) %>% + pivot_longer( + everything(), + names_to = c("Measurement", ".value"), + names_sep = "_(?=[^_]+$)" # Split at last underscore + ) %>% + mutate(mean = round(mean, 3), + sd = round(sd, 3)) + +kable(summary_stats) ``` diff --git a/Data/aquifer_well/well_test_202509/TEMPEST_Aquifer_WellTest_202509_Data.log b/Data/aquifer_well/well_test_202509/TEMPEST_Aquifer_WellTest_202509_Data.log new file mode 100644 index 0000000..93e2e76 --- /dev/null +++ b/Data/aquifer_well/well_test_202509/TEMPEST_Aquifer_WellTest_202509_Data.log @@ -0,0 +1,488 @@ +This is pdfTeX, Version 3.141592653-2.6-1.40.28 (TeX Live 2025) (preloaded format=pdflatex 2025.9.16) 16 SEP 2025 15:18 +entering extended mode + restricted \write18 enabled. + %&-line parsing enabled. +**TEMPEST_Aquifer_WellTest_202509_Data.tex +(./TEMPEST_Aquifer_WellTest_202509_Data.tex +LaTeX2e <2025-06-01> patch level 1 +L3 programming layer <2025-08-13> +(c:/Users/wilsonsj/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/base/article.cls +Document Class: article 2025/01/22 v1.4n Standard LaTeX document class +(c:/Users/wilsonsj/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/base/size10.clo +File: size10.clo 2025/01/22 v1.4n Standard LaTeX file (size option) +) +\c@part=\count275 +\c@section=\count276 +\c@subsection=\count277 +\c@subsubsection=\count278 +\c@paragraph=\count279 +\c@subparagraph=\count280 +\c@figure=\count281 +\c@table=\count282 +\abovecaptionskip=\skip49 +\belowcaptionskip=\skip50 +\bibindent=\dimen148 +) (c:/Users/wilsonsj/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/amsmath/amsmath.sty +Package: amsmath 2025/06/16 v2.17y AMS math features +\@mathmargin=\skip51 +For additional information on amsmath, use the `?' option. +(c:/Users/wilsonsj/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/amsmath/amstext.sty +Package: amstext 2024/11/17 v2.01 AMS text +(c:/Users/wilsonsj/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/amsmath/amsgen.sty +File: amsgen.sty 1999/11/30 v2.0 generic functions +\@emptytoks=\toks17 +\ex@=\dimen149 +)) (c:/Users/wilsonsj/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/amsmath/amsbsy.sty +Package: amsbsy 1999/11/29 v1.2d Bold Symbols +\pmbraise@=\dimen150 +) (c:/Users/wilsonsj/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/amsmath/amsopn.sty +Package: amsopn 2022/04/08 v2.04 operator names +) +\inf@bad=\count283 +LaTeX Info: Redefining \frac on input line 233. +\uproot@=\count284 +\leftroot@=\count285 +LaTeX Info: Redefining \overline on input line 398. +LaTeX Info: Redefining \colon on input line 409. +\classnum@=\count286 +\DOTSCASE@=\count287 +LaTeX Info: Redefining \ldots on input line 495. +LaTeX Info: Redefining \dots on input line 498. +LaTeX Info: Redefining \cdots on input line 619. +\Mathstrutbox@=\box53 +\strutbox@=\box54 +LaTeX Info: Redefining \big on input line 721. +LaTeX Info: Redefining \Big on input line 722. +LaTeX Info: Redefining \bigg on input line 723. +LaTeX Info: Redefining \Bigg on input line 724. +\big@size=\dimen151 +LaTeX Font Info: Redeclaring font encoding OML on input line 742. +LaTeX Font Info: Redeclaring font encoding OMS on input line 743. +\macc@depth=\count288 +LaTeX Info: Redefining \bmod on input line 904. +LaTeX Info: Redefining \pmod on input line 909. +LaTeX Info: Redefining \smash on input line 939. +LaTeX Info: Redefining \relbar on input line 969. +LaTeX Info: Redefining \Relbar on input line 970. +\c@MaxMatrixCols=\count289 +\dotsspace@=\muskip17 +\c@parentequation=\count290 +\dspbrk@lvl=\count291 +\tag@help=\toks18 +\row@=\count292 +\column@=\count293 +\maxfields@=\count294 +\andhelp@=\toks19 +\eqnshift@=\dimen152 +\alignsep@=\dimen153 +\tagshift@=\dimen154 +\tagwidth@=\dimen155 +\totwidth@=\dimen156 +\lineht@=\dimen157 +\@envbody=\toks20 +\multlinegap=\skip52 +\multlinetaggap=\skip53 +\mathdisplay@stack=\toks21 +LaTeX Info: Redefining \[ on input line 2949. +LaTeX Info: Redefining \] on input line 2950. +) (c:/Users/wilsonsj/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/amsfonts/amssymb.sty +Package: amssymb 2013/01/14 v3.01 AMS font symbols +(c:/Users/wilsonsj/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/amsfonts/amsfonts.sty +Package: amsfonts 2013/01/14 v3.01 Basic AMSFonts support +\symAMSa=\mathgroup4 +\symAMSb=\mathgroup5 +LaTeX Font Info: Redeclaring math symbol \hbar on input line 98. +LaTeX Font Info: Overwriting math alphabet `\mathfrak' in version `bold' +(Font) U/euf/m/n --> U/euf/b/n on input line 106. +)) (c:/Users/wilsonsj/AppData/Roaming/TinyTeX/texmf-dist/tex/generic/iftex/iftex.sty +Package: iftex 2024/12/12 v1.0g TeX engine tests +) (c:/Users/wilsonsj/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/base/fontenc.sty +Package: fontenc 2024/12/21 v2.1c Standard LaTeX package +) (c:/Users/wilsonsj/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/base/inputenc.sty +Package: inputenc 2024/02/08 v1.3d Input encoding file +\inpenc@prehook=\toks22 +\inpenc@posthook=\toks23 +) (c:/Users/wilsonsj/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/base/textcomp.sty +Package: textcomp 2024/04/24 v2.1b Standard LaTeX package +) (c:/Users/wilsonsj/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/lm/lmodern.sty +Package: lmodern 2015/05/01 v1.6.1 Latin Modern Fonts +LaTeX Font Info: Overwriting symbol font `operators' in version `normal' +(Font) OT1/cmr/m/n --> OT1/lmr/m/n on input line 22. +LaTeX Font Info: Overwriting symbol font `letters' in version `normal' +(Font) OML/cmm/m/it --> OML/lmm/m/it on input line 23. +LaTeX Font Info: Overwriting symbol font `symbols' in version `normal' +(Font) OMS/cmsy/m/n --> OMS/lmsy/m/n on input line 24. +LaTeX Font Info: Overwriting symbol font `largesymbols' in version `normal' +(Font) OMX/cmex/m/n --> OMX/lmex/m/n on input line 25. +LaTeX Font Info: Overwriting symbol font `operators' in version `bold' +(Font) OT1/cmr/bx/n --> OT1/lmr/bx/n on input line 26. +LaTeX Font Info: Overwriting symbol font `letters' in version `bold' +(Font) OML/cmm/b/it --> OML/lmm/b/it on input line 27. +LaTeX Font Info: Overwriting symbol font `symbols' in version `bold' +(Font) OMS/cmsy/b/n --> OMS/lmsy/b/n on input line 28. +LaTeX Font Info: Overwriting symbol font `largesymbols' in version `bold' +(Font) OMX/cmex/m/n --> OMX/lmex/m/n on input line 29. +LaTeX Font Info: Overwriting math alphabet `\mathbf' in version `normal' +(Font) OT1/cmr/bx/n --> OT1/lmr/bx/n on input line 31. +LaTeX Font Info: Overwriting math alphabet `\mathsf' in version `normal' +(Font) OT1/cmss/m/n --> OT1/lmss/m/n on input line 32. +LaTeX Font Info: Overwriting math alphabet `\mathit' in version `normal' +(Font) OT1/cmr/m/it --> OT1/lmr/m/it on input line 33. +LaTeX Font Info: Overwriting math alphabet `\mathtt' in version `normal' +(Font) OT1/cmtt/m/n --> OT1/lmtt/m/n on input line 34. +LaTeX Font Info: Overwriting math alphabet `\mathbf' in version `bold' +(Font) OT1/cmr/bx/n --> OT1/lmr/bx/n on input line 35. +LaTeX Font Info: Overwriting math alphabet `\mathsf' in version `bold' +(Font) OT1/cmss/bx/n --> OT1/lmss/bx/n on input line 36. +LaTeX Font Info: Overwriting math alphabet `\mathit' in version `bold' +(Font) OT1/cmr/bx/it --> OT1/lmr/bx/it on input line 37. +LaTeX Font Info: Overwriting math alphabet `\mathtt' in version `bold' +(Font) OT1/cmtt/m/n --> OT1/lmtt/m/n on input line 38. +) (c:/Users/wilsonsj/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/xcolor/xcolor.sty +Package: xcolor 2024/09/29 v3.02 LaTeX color extensions (UK) +(c:/Users/wilsonsj/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/graphics-cfg/color.cfg +File: color.cfg 2016/01/02 v1.6 sample color configuration +) +Package xcolor Info: Driver file: pdftex.def on input line 274. +(c:/Users/wilsonsj/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/graphics-def/pdftex.def +File: pdftex.def 2024/04/13 v1.2c Graphics/color driver for pdftex +) (c:/Users/wilsonsj/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/graphics/mathcolor.ltx) +Package xcolor Info: Model `cmy' substituted by `cmy0' on input line 1349. +Package xcolor Info: Model `hsb' substituted by `rgb' on input line 1353. +Package xcolor Info: Model `RGB' extended on input line 1365. +Package xcolor Info: Model `HTML' substituted by `rgb' on input line 1367. +Package xcolor Info: Model `Hsb' substituted by `hsb' on input line 1368. +Package xcolor Info: Model `tHsb' substituted by `hsb' on input line 1369. +Package xcolor Info: Model `HSB' substituted by `hsb' on input line 1370. +Package xcolor Info: Model `Gray' substituted by `gray' on input line 1371. +Package xcolor Info: Model `wave' substituted by `hsb' on input line 1372. +) (c:/Users/wilsonsj/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/geometry/geometry.sty +Package: geometry 2020/01/02 v5.9 Page Geometry +(c:/Users/wilsonsj/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/graphics/keyval.sty +Package: keyval 2022/05/29 v1.15 key=value parser (DPC) +\KV@toks@=\toks24 +) (c:/Users/wilsonsj/AppData/Roaming/TinyTeX/texmf-dist/tex/generic/iftex/ifvtex.sty +Package: ifvtex 2019/10/25 v1.7 ifvtex legacy package. Use iftex instead. +) +\Gm@cnth=\count295 +\Gm@cntv=\count296 +\c@Gm@tempcnt=\count297 +\Gm@bindingoffset=\dimen158 +\Gm@wd@mp=\dimen159 +\Gm@odd@mp=\dimen160 +\Gm@even@mp=\dimen161 +\Gm@layoutwidth=\dimen162 +\Gm@layoutheight=\dimen163 +\Gm@layouthoffset=\dimen164 +\Gm@layoutvoffset=\dimen165 +\Gm@dimlist=\toks25 +) (c:/Users/wilsonsj/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/tools/longtable.sty +Package: longtable 2024-12-18 v4.23 Multi-page Table package (DPC) +\LTleft=\skip54 +\LTright=\skip55 +\LTpre=\skip56 +\LTpost=\skip57 +\LTchunksize=\count298 +\LTcapwidth=\dimen166 +\LT@head=\box55 +\LT@firsthead=\box56 +\LT@foot=\box57 +\LT@lastfoot=\box58 +\LT@gbox=\box59 +\LT@cols=\count299 +\LT@rows=\count300 +\c@LT@tables=\count301 +\c@LT@chunks=\count302 +\LT@p@ftn=\toks26 +) (c:/Users/wilsonsj/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/booktabs/booktabs.sty +Package: booktabs 2020/01/12 v1.61803398 Publication quality tables +\heavyrulewidth=\dimen167 +\lightrulewidth=\dimen168 +\cmidrulewidth=\dimen169 +\belowrulesep=\dimen170 +\belowbottomsep=\dimen171 +\aboverulesep=\dimen172 +\abovetopsep=\dimen173 +\cmidrulesep=\dimen174 +\cmidrulekern=\dimen175 +\defaultaddspace=\dimen176 +\@cmidla=\count303 +\@cmidlb=\count304 +\@aboverulesep=\dimen177 +\@belowrulesep=\dimen178 +\@thisruleclass=\count305 +\@lastruleclass=\count306 +\@thisrulewidth=\dimen179 +) (c:/Users/wilsonsj/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/tools/array.sty +Package: array 2025/06/08 v2.6j Tabular extension package (FMi) +\col@sep=\dimen180 +\ar@mcellbox=\box60 +\extrarowheight=\dimen181 +\NC@list=\toks27 +\extratabsurround=\skip58 +\backup@length=\skip59 +\ar@cellbox=\box61 +) (c:/Users/wilsonsj/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/tools/calc.sty +Package: calc 2025/03/01 v4.3b Infix arithmetic (KKT,FJ) +\calc@Acount=\count307 +\calc@Bcount=\count308 +\calc@Adimen=\dimen182 +\calc@Bdimen=\dimen183 +\calc@Askip=\skip60 +\calc@Bskip=\skip61 +LaTeX Info: Redefining \setlength on input line 86. +LaTeX Info: Redefining \addtolength on input line 87. +\calc@Ccount=\count309 +\calc@Cskip=\skip62 +) (c:/Users/wilsonsj/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/etoolbox/etoolbox.sty +Package: etoolbox 2025/02/11 v2.5l e-TeX tools for LaTeX (JAW) +\etb@tempcnta=\count310 +) (c:/Users/wilsonsj/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/mdwtools/footnote.sty +Package: footnote 1997/01/28 1.13 Save footnotes around boxes +\fn@notes=\box62 +\fn@width=\dimen184 +) (c:/Users/wilsonsj/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/graphics/graphicx.sty +Package: graphicx 2024/12/31 v1.2e Enhanced LaTeX Graphics (DPC,SPQR) +(c:/Users/wilsonsj/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/graphics/graphics.sty +Package: graphics 2024/08/06 v1.4g Standard LaTeX Graphics (DPC,SPQR) +(c:/Users/wilsonsj/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/graphics/trig.sty +Package: trig 2023/12/02 v1.11 sin cos tan (DPC) +) (c:/Users/wilsonsj/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/graphics-cfg/graphics.cfg +File: graphics.cfg 2016/06/04 v1.11 sample graphics configuration +) +Package graphics Info: Driver file: pdftex.def on input line 106. +) +\Gin@req@height=\dimen185 +\Gin@req@width=\dimen186 +) (c:/Users/wilsonsj/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/bookmark/bookmark.sty +Package: bookmark 2023-12-10 v1.31 PDF bookmarks (HO) +(c:/Users/wilsonsj/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/hyperref/hyperref.sty +Package: hyperref 2025-07-12 v7.01o Hypertext links for LaTeX +(c:/Users/wilsonsj/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/kvsetkeys/kvsetkeys.sty +Package: kvsetkeys 2022-10-05 v1.19 Key value parser (HO) +) (c:/Users/wilsonsj/AppData/Roaming/TinyTeX/texmf-dist/tex/generic/kvdefinekeys/kvdefinekeys.sty +Package: kvdefinekeys 2019-12-19 v1.6 Define keys (HO) +) (c:/Users/wilsonsj/AppData/Roaming/TinyTeX/texmf-dist/tex/generic/pdfescape/pdfescape.sty +Package: pdfescape 2019/12/09 v1.15 Implements pdfTeX's escape features (HO) +(c:/Users/wilsonsj/AppData/Roaming/TinyTeX/texmf-dist/tex/generic/ltxcmds/ltxcmds.sty +Package: ltxcmds 2023-12-04 v1.26 LaTeX kernel commands for general use (HO) +) (c:/Users/wilsonsj/AppData/Roaming/TinyTeX/texmf-dist/tex/generic/pdftexcmds/pdftexcmds.sty +Package: pdftexcmds 2020-06-27 v0.33 Utility functions of pdfTeX for LuaTeX (HO) +(c:/Users/wilsonsj/AppData/Roaming/TinyTeX/texmf-dist/tex/generic/infwarerr/infwarerr.sty +Package: infwarerr 2019/12/03 v1.5 Providing info/warning/error messages (HO) +) +Package pdftexcmds Info: \pdf@primitive is available. +Package pdftexcmds Info: \pdf@ifprimitive is available. +Package pdftexcmds Info: \pdfdraftmode found. +)) (c:/Users/wilsonsj/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/hycolor/hycolor.sty +Package: hycolor 2020-01-27 v1.10 Color options for hyperref/bookmark (HO) +) (c:/Users/wilsonsj/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/hyperref/nameref.sty +Package: nameref 2025-06-21 v2.57 Cross-referencing by name of section +(c:/Users/wilsonsj/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/refcount/refcount.sty +Package: refcount 2019/12/15 v3.6 Data extraction from label references (HO) +) (c:/Users/wilsonsj/AppData/Roaming/TinyTeX/texmf-dist/tex/generic/gettitlestring/gettitlestring.sty +Package: gettitlestring 2019/12/15 v1.6 Cleanup title references (HO) +(c:/Users/wilsonsj/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/kvoptions/kvoptions.sty +Package: kvoptions 2022-06-15 v3.15 Key value format for package options (HO) +)) +\c@section@level=\count311 +) (c:/Users/wilsonsj/AppData/Roaming/TinyTeX/texmf-dist/tex/generic/stringenc/stringenc.sty +Package: stringenc 2019/11/29 v1.12 Convert strings between diff. encodings (HO) +) +\@linkdim=\dimen187 +\Hy@linkcounter=\count312 +\Hy@pagecounter=\count313 +(c:/Users/wilsonsj/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/hyperref/pd1enc.def +File: pd1enc.def 2025-07-12 v7.01o Hyperref: PDFDocEncoding definition (HO) +Now handling font encoding PD1 ... +... no UTF-8 mapping file for font encoding PD1 +) (c:/Users/wilsonsj/AppData/Roaming/TinyTeX/texmf-dist/tex/generic/intcalc/intcalc.sty +Package: intcalc 2019/12/15 v1.3 Expandable calculations with integers (HO) +) +\Hy@SavedSpaceFactor=\count314 +(c:/Users/wilsonsj/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/hyperref/puenc.def +File: puenc.def 2025-07-12 v7.01o Hyperref: PDF Unicode definition (HO) +Now handling font encoding PU ... +... no UTF-8 mapping file for font encoding PU +) +Package hyperref Info: Option `unicode' set `true' on input line 4066. +Package hyperref Info: Hyper figures OFF on input line 4195. +Package hyperref Info: Link nesting OFF on input line 4200. +Package hyperref Info: Hyper index ON on input line 4203. +Package hyperref Info: Plain pages OFF on input line 4210. +Package hyperref Info: Backreferencing OFF on input line 4215. +Package hyperref Info: Implicit mode ON; LaTeX internals redefined. +Package hyperref Info: Bookmarks ON on input line 4462. +\c@Hy@tempcnt=\count315 +(c:/Users/wilsonsj/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/url/url.sty +\Urlmuskip=\muskip18 +Package: url 2013/09/16 ver 3.4 Verb mode for urls, etc. +) +LaTeX Info: Redefining \url on input line 4801. +\XeTeXLinkMargin=\dimen188 +(c:/Users/wilsonsj/AppData/Roaming/TinyTeX/texmf-dist/tex/generic/bitset/bitset.sty +Package: bitset 2019/12/09 v1.3 Handle bit-vector datatype (HO) +(c:/Users/wilsonsj/AppData/Roaming/TinyTeX/texmf-dist/tex/generic/bigintcalc/bigintcalc.sty +Package: bigintcalc 2019/12/15 v1.5 Expandable calculations on big integers (HO) +)) +\Fld@menulength=\count316 +\Field@Width=\dimen189 +\Fld@charsize=\dimen190 +Package hyperref Info: Hyper figures OFF on input line 6078. +Package hyperref Info: Link nesting OFF on input line 6083. +Package hyperref Info: Hyper index ON on input line 6086. +Package hyperref Info: backreferencing OFF on input line 6093. +Package hyperref Info: Link coloring OFF on input line 6098. +Package hyperref Info: Link coloring with OCG OFF on input line 6103. +Package hyperref Info: PDF/A mode OFF on input line 6108. +\Hy@abspage=\count317 +\c@Item=\count318 +\c@Hfootnote=\count319 +) +Package hyperref Info: Driver (autodetected): hpdftex. +(c:/Users/wilsonsj/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/hyperref/hpdftex.def +File: hpdftex.def 2025-07-12 v7.01o Hyperref driver for pdfTeX +\Fld@listcount=\count320 +\c@bookmark@seq@number=\count321 +(c:/Users/wilsonsj/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/rerunfilecheck/rerunfilecheck.sty +Package: rerunfilecheck 2025-06-21 v1.11 Rerun checks for auxiliary files (HO) +(c:/Users/wilsonsj/AppData/Roaming/TinyTeX/texmf-dist/tex/generic/uniquecounter/uniquecounter.sty +Package: uniquecounter 2019/12/15 v1.4 Provide unlimited unique counter (HO) +) +Package uniquecounter Info: New unique counter `rerunfilecheck' on input line 284. +) +\Hy@SectionHShift=\skip63 +) (c:/Users/wilsonsj/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/bookmark/bkm-pdftex.def +File: bkm-pdftex.def 2023-12-10 v1.31 bookmark driver for pdfTeX and luaTeX (HO) +\BKM@id=\count322 +)) +LaTeX Font Info: Trying to load font information for T1+lmr on input line 83. +(c:/Users/wilsonsj/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/lm/t1lmr.fd +File: t1lmr.fd 2015/05/01 v1.6.1 Font defs for Latin Modern +) (c:/Users/wilsonsj/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def +File: l3backend-pdftex.def 2025-06-09 L3 backend support: PDF output (pdfTeX) +\l__color_backend_stack_int=\count323 +) +No file TEMPEST_Aquifer_WellTest_202509_Data.aux. +\openout1 = `TEMPEST_Aquifer_WellTest_202509_Data.aux'. + +LaTeX Font Info: Checking defaults for OML/cmm/m/it on input line 83. +LaTeX Font Info: ... okay on input line 83. +LaTeX Font Info: Checking defaults for OMS/cmsy/m/n on input line 83. +LaTeX Font Info: ... okay on input line 83. +LaTeX Font Info: Checking defaults for OT1/cmr/m/n on input line 83. +LaTeX Font Info: ... okay on input line 83. +LaTeX Font Info: Checking defaults for T1/cmr/m/n on input line 83. +LaTeX Font Info: ... okay on input line 83. +LaTeX Font Info: Checking defaults for TS1/cmr/m/n on input line 83. +LaTeX Font Info: ... okay on input line 83. +LaTeX Font Info: Checking defaults for OMX/cmex/m/n on input line 83. +LaTeX Font Info: ... okay on input line 83. +LaTeX Font Info: Checking defaults for U/cmr/m/n on input line 83. +LaTeX Font Info: ... okay on input line 83. +LaTeX Font Info: Checking defaults for PD1/pdf/m/n on input line 83. +LaTeX Font Info: ... okay on input line 83. +LaTeX Font Info: Checking defaults for PU/pdf/m/n on input line 83. +LaTeX Font Info: ... okay on input line 83. +(c:/Users/wilsonsj/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty +Package: epstopdf-base 2020-01-24 v2.11 Base part for package epstopdf +Package epstopdf-base Info: Redefining graphics rule for `.eps' on input line 485. +(c:/Users/wilsonsj/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg +File: epstopdf-sys.cfg 2010/07/13 v1.3 Configuration of (r)epstopdf for TeX Live +)) +*geometry* driver: auto-detecting +*geometry* detected driver: pdftex +*geometry* verbose mode - [ preamble ] result: +* driver: pdftex +* paper: +* layout: +* layoutoffset:(h,v)=(0.0pt,0.0pt) +* modes: +* h-part:(L,W,R)=(72.26999pt, 469.75502pt, 72.26999pt) +* v-part:(T,H,B)=(72.26999pt, 650.43001pt, 72.26999pt) +* \paperwidth=614.295pt +* \paperheight=794.96999pt +* \textwidth=469.75502pt +* \textheight=650.43001pt +* \oddsidemargin=0.0pt +* \evensidemargin=0.0pt +* \topmargin=-37.0pt +* \headheight=12.0pt +* \headsep=25.0pt +* \topskip=10.0pt +* \footskip=30.0pt +* \marginparwidth=65.0pt +* \marginparsep=11.0pt +* \columnsep=10.0pt +* \skip\footins=9.0pt plus 4.0pt minus 2.0pt +* \hoffset=0.0pt +* \voffset=0.0pt +* \mag=1000 +* \@twocolumnfalse +* \@twosidefalse +* \@mparswitchfalse +* \@reversemarginfalse +* (1in=72.27pt=25.4mm, 1cm=28.453pt) + +Package hyperref Info: Link coloring OFF on input line 83. +LaTeX Font Info: Trying to load font information for OT1+lmr on input line 85. +(c:/Users/wilsonsj/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/lm/ot1lmr.fd +File: ot1lmr.fd 2015/05/01 v1.6.1 Font defs for Latin Modern +) +LaTeX Font Info: Trying to load font information for OML+lmm on input line 85. +(c:/Users/wilsonsj/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/lm/omllmm.fd +File: omllmm.fd 2015/05/01 v1.6.1 Font defs for Latin Modern +) +LaTeX Font Info: Trying to load font information for OMS+lmsy on input line 85. +(c:/Users/wilsonsj/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/lm/omslmsy.fd +File: omslmsy.fd 2015/05/01 v1.6.1 Font defs for Latin Modern +) +LaTeX Font Info: Trying to load font information for OMX+lmex on input line 85. +(c:/Users/wilsonsj/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/lm/omxlmex.fd +File: omxlmex.fd 2015/05/01 v1.6.1 Font defs for Latin Modern +) +LaTeX Font Info: External font `lmex10' loaded for size +(Font) <12> on input line 85. +LaTeX Font Info: External font `lmex10' loaded for size +(Font) <8> on input line 85. +LaTeX Font Info: External font `lmex10' loaded for size +(Font) <6> on input line 85. +LaTeX Font Info: Trying to load font information for U+msa on input line 85. +(c:/Users/wilsonsj/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/amsfonts/umsa.fd +File: umsa.fd 2013/01/14 v3.01 AMS symbols A +) +LaTeX Font Info: Trying to load font information for U+msb on input line 85. +(c:/Users/wilsonsj/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/amsfonts/umsb.fd +File: umsb.fd 2013/01/14 v3.01 AMS symbols B +) +LaTeX Font Info: Trying to load font information for T1+lmtt on input line 90. +(c:/Users/wilsonsj/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/lm/t1lmtt.fd +File: t1lmtt.fd 2015/05/01 v1.6.1 Font defs for Latin Modern +) +LaTeX Font Info: Trying to load font information for TS1+lmtt on input line 154. +(c:/Users/wilsonsj/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/lm/ts1lmtt.fd +File: ts1lmtt.fd 2015/05/01 v1.6.1 Font defs for Latin Modern +) + +! LaTeX Error: Unicode character Ω (U+03A9) + not set up for use with LaTeX. + +See the LaTeX manual or LaTeX Companion for explanation. +Type H for immediate help. + ... + +l.154 \end{verbatim} + +You may provide a definition with +\DeclareUnicodeCharacter + + +Here is how much of TeX's memory you used: + 11362 strings out of 469781 + 176105 string characters out of 5480316 + 587547 words of memory out of 5000000 + 39590 multiletter control sequences out of 15000+600000 + 652474 words of font info for 63 fonts, out of 8000000 for 9000 + 14 hyphenation exceptions out of 8191 + 89i,6n,93p,435b,430s stack positions out of 10000i,1000n,20000p,200000b,200000s +! ==> Fatal error occurred, no output PDF file produced! diff --git a/Data/aquifer_well/well_test_202509/TEMPEST_Aquifer_WellTest_202509_Data.tex b/Data/aquifer_well/well_test_202509/TEMPEST_Aquifer_WellTest_202509_Data.tex new file mode 100644 index 0000000..871ebb5 --- /dev/null +++ b/Data/aquifer_well/well_test_202509/TEMPEST_Aquifer_WellTest_202509_Data.tex @@ -0,0 +1,174 @@ +% Options for packages loaded elsewhere +\PassOptionsToPackage{unicode}{hyperref} +\PassOptionsToPackage{hyphens}{url} +% +\documentclass[ +]{article} +\usepackage{amsmath,amssymb} +\usepackage{iftex} +\ifPDFTeX + \usepackage[T1]{fontenc} + \usepackage[utf8]{inputenc} + \usepackage{textcomp} % provide euro and other symbols +\else % if luatex or xetex + \usepackage{unicode-math} % this also loads fontspec + \defaultfontfeatures{Scale=MatchLowercase} + \defaultfontfeatures[\rmfamily]{Ligatures=TeX,Scale=1} +\fi +\usepackage{lmodern} +\ifPDFTeX\else + % xetex/luatex font selection +\fi +% Use upquote if available, for straight quotes in verbatim environments +\IfFileExists{upquote.sty}{\usepackage{upquote}}{} +\IfFileExists{microtype.sty}{% use microtype if available + \usepackage[]{microtype} + \UseMicrotypeSet[protrusion]{basicmath} % disable protrusion for tt fonts +}{} +\makeatletter +\@ifundefined{KOMAClassName}{% if non-KOMA class + \IfFileExists{parskip.sty}{% + \usepackage{parskip} + }{% else + \setlength{\parindent}{0pt} + \setlength{\parskip}{6pt plus 2pt minus 1pt}} +}{% if KOMA class + \KOMAoptions{parskip=half}} +\makeatother +\usepackage{xcolor} +\usepackage[margin=1in]{geometry} +\usepackage{longtable,booktabs,array} +\usepackage{calc} % for calculating minipage widths +% Correct order of tables after \paragraph or \subparagraph +\usepackage{etoolbox} +\makeatletter +\patchcmd\longtable{\par}{\if@noskipsec\mbox{}\fi\par}{}{} +\makeatother +% Allow footnotes in longtable head/foot +\IfFileExists{footnotehyper.sty}{\usepackage{footnotehyper}}{\usepackage{footnote}} +\makesavenoteenv{longtable} +\usepackage{graphicx} +\makeatletter +\def\maxwidth{\ifdim\Gin@nat@width>\linewidth\linewidth\else\Gin@nat@width\fi} +\def\maxheight{\ifdim\Gin@nat@height>\textheight\textheight\else\Gin@nat@height\fi} +\makeatother +% Scale images if necessary, so that they will not overflow the page +% margins by default, and it is still possible to overwrite the defaults +% using explicit options in \includegraphics[width, height, ...]{} +\setkeys{Gin}{width=\maxwidth,height=\maxheight,keepaspectratio} +% Set default figure placement to htbp +\makeatletter +\def\fps@figure{htbp} +\makeatother +\setlength{\emergencystretch}{3em} % prevent overfull lines +\providecommand{\tightlist}{% + \setlength{\itemsep}{0pt}\setlength{\parskip}{0pt}} +\setcounter{secnumdepth}{-\maxdimen} % remove section numbering +\ifLuaTeX + \usepackage{selnolig} % disable illegal ligatures +\fi +\IfFileExists{bookmark.sty}{\usepackage{bookmark}}{\usepackage{hyperref}} +\IfFileExists{xurl.sty}{\usepackage{xurl}}{} % add URL line breaks if available +\urlstyle{same} +\hypersetup{ + pdftitle={TEMPEST\_Aquifer\_WellTest\_202509}, + pdfauthor={Stephanie J. Wilson}, + hidelinks, + pdfcreator={LaTeX via pandoc}} + +\title{TEMPEST\_Aquifer\_WellTest\_202509} +\author{Stephanie J. Wilson} +\date{2025-09-05} + +\begin{document} +\maketitle + +\hypertarget{aquatroll-aq600-well-data}{% +\subsection{Aquatroll (AQ600) Well +Data}\label{aquatroll-aq600-well-data}} + +\begin{verbatim} +## Date.Time pH..pH...944309. pH.mV..mV...944309. ORP..mV...944309. +## 1 9/4/2025 11:17 6.495730 -18.05306 52.60867 +## 2 9/4/2025 11:18 6.647882 -26.98898 68.12972 +## 3 9/4/2025 11:19 6.682134 -29.02031 85.54858 +## 4 9/4/2025 11:20 6.633854 -26.22127 77.78805 +## 5 9/4/2025 11:21 6.560904 -21.94166 82.00092 +## 6 9/4/2025 11:22 6.654690 -27.51112 82.88068 +## RDO.Concentration..mg.L...1147009. RDO.Saturation...Sat...1147009. +## 1 8.606227 105.6606 +## 2 8.534517 104.2574 +## 3 8.352296 102.1634 +## 4 8.202514 101.0138 +## 5 8.139626 100.5348 +## 6 8.077275 100.3783 +## Oxygen.Partial.Pressure..Torr...1147009. Actual.Conductivity..µS.cm...951425. +## 1 164.3766 2.58297180 +## 2 162.5227 0.16385819 +## 3 159.4851 0.14043684 +## 4 157.7733 0.05494505 +## 5 157.2076 0.05494505 +## 6 156.9583 0.05494505 +## Specific.Conductivity..µS.cm...951425. Salinity..PSU...951425. +## 1 2.41987160 0.000197676 +## 2 0.15404756 0.000000000 +## 3 0.13160895 0.000000000 +## 4 0.05105140 0.000000000 +## 5 0.05080564 0.000000000 +## 6 0.05044154 0.000000000 +## Resistivity..Ω.cm...951425. Density..g.cm....951425. +## 1 387151 0.9960858 +## 2 6102838 0.9961417 +## 3 7120639 0.9960905 +## 4 18200000 0.9959506 +## 5 18200000 0.9958704 +## 6 18200000 0.9957489 +## Total.Dissolved.Solids..ppt...951425. Temperature...C...951973. +## 1 0.001572917 28.52881 +## 2 0.000100131 28.33433 +## 3 0.000085500 28.51187 +## 4 0.000033200 28.99316 +## 5 0.000033000 29.26573 +## 6 0.000032800 29.67444 +## External.Voltage..V...951973. Battery.Capacity......951973. +## 1 0.198 85 +## 2 0.225 85 +## 3 0.252 85 +## 4 0.279 85 +## 5 0.279 85 +## 6 0.279 85 +## Barometric.Pressure..mm.Hg...951973. Pressure..psi...948746. +## 1 796.8252 -0.7291880 +## 2 798.0554 -0.7513886 +## 3 799.4504 -0.7792616 +## 4 800.6805 -0.8005018 +## 5 802.0531 -0.8337517 +## 6 802.7581 -0.8441944 +## Depth..cm...948746. +## 1 -50.73192 +## 2 -33.94244 +## 3 -40.70903 +## 4 -42.28736 +## 5 -44.53247 +## 6 -45.24200 +\end{verbatim} + +\includegraphics{TEMPEST_Aquifer_WellTest_202509_Data_files/figure-latex/unnamed-chunk-1-1.pdf} +\includegraphics{TEMPEST_Aquifer_WellTest_202509_Data_files/figure-latex/unnamed-chunk-1-2.pdf} +\includegraphics{TEMPEST_Aquifer_WellTest_202509_Data_files/figure-latex/unnamed-chunk-1-3.pdf} +\includegraphics{TEMPEST_Aquifer_WellTest_202509_Data_files/figure-latex/unnamed-chunk-1-4.pdf} + +\begin{longtable}[]{@{}lrr@{}} +\toprule\noalign{} +Measurement & mean & sd \\ +\midrule\noalign{} +\endhead +\bottomrule\noalign{} +\endlastfoot +Salinity\_psu & 0.090 & 0.005 \\ +Sp\_Conductivity\_µScm & 188.638 & 10.162 \\ +DO\_mgL & 0.208 & 0.232 \\ +TDS\_ppt & 0.123 & 0.007 \\ +\end{longtable} + +\end{document} diff --git a/Data/aquifer_well/well_test_202509/TEMPEST_Aquifer_WellTest_202509__Discrete_Data.Rmd b/Data/aquifer_well/well_test_202509/TEMPEST_Aquifer_WellTest_202509__Discrete_Data.Rmd new file mode 100644 index 0000000..8dc2914 --- /dev/null +++ b/Data/aquifer_well/well_test_202509/TEMPEST_Aquifer_WellTest_202509__Discrete_Data.Rmd @@ -0,0 +1,59 @@ +--- +title: "TEMPEST_FW_Well_TSS_20250904" +author: "Stephanie J. Wilson" +date: "2025-09-15" +output: pdf_document +--- + +```{r setup, include=FALSE} +library(ggplot2) +library(dplyr) +library(knitr) +``` + +## TSS Data + +```{r} + +#Read in the data +tss <- read.csv("COMPASS_TEMPEST_WellTest_TSS_Data.csv") +head(tss) + +#Calculate an Avg. Sample Weight and caluclate TSS mg/L +tss <- tss %>% + mutate(Avg_Sample_Weight_g = + rowMeans(select(., Tin_Filter_Sample_Weight_Dry_g, + Tin_Filter_Sample_Weight_Dry1_g), na.rm = TRUE)) + +tss$TSS_mgL <- ((tss$Avg_Sample_Weight_g - tss$Tin_Filter_Weight_g)*1000) / + (tss$Filtered_Volume_mL/1000) + + + +#plot the TSS +tss_plot <- ggplot(tss, aes(x=Sample_ID, y=TSS_mgL, fill=Sample_ID)) + + geom_bar(stat = "identity") + theme_minimal() + + ylab("Total Dissolved Solids (mg/L)") + xlab(" ") + + theme(legend.position = "none") + +print(tss_plot) + +##remove the DI blank and make a table + +tss_table <- tss %>% + filter(Sample_ID != "DI_Blank") %>% + select("Sample_ID", "TSS_mgL") %>% + mutate(TSS_mgL = round(TSS_mgL, 2)) + + +kable(tss_table) + + +``` + +## DIC Data + +## TOC/TN Data + +## Sulfate / Chloride Data + diff --git a/Data/aquifer_well/well_test_202509/TEMPEST_Aquifer_WellTest_202509__Discrete_Data.pdf b/Data/aquifer_well/well_test_202509/TEMPEST_Aquifer_WellTest_202509__Discrete_Data.pdf new file mode 100644 index 0000000..be9ebef Binary files /dev/null and b/Data/aquifer_well/well_test_202509/TEMPEST_Aquifer_WellTest_202509__Discrete_Data.pdf differ diff --git a/Data/aquifer_well/well_test_202509/TEMPEST_Well_20250904_ScannedDataSheets.pdf b/Data/aquifer_well/well_test_202509/TEMPEST_Well_20250904_ScannedDataSheets.pdf new file mode 100644 index 0000000..c8a5c55 Binary files /dev/null and b/Data/aquifer_well/well_test_202509/TEMPEST_Well_20250904_ScannedDataSheets.pdf differ