catalyst-project.github.io/_pkgdown.yml at master · CATALYST-project/catalyst-project.github.io · GitHub

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url: http://valr.hesselberthlab.org

template:
  params:
    bootswatch: simplex
    ganalytics: UA-54095998-3

development:
  version_tooltip: "Release version"

navbar:
  structure:
    right: [robinson, bodenmiller]
  components:
    home: ~
    reference:
      text: Documentation
    articles:
      text: Guides
    news:
      text: News
    robinson:
      text: Robinson Lab
      href: http://www.imls.uzh.ch/en/research/robinson.html
    bodenmiller:
      text: Bodenmiller Lab
      href: http://www.bodenmillerlab.org

reference:
  - title: Example data
    contents:
    - data

  - title: Concatenation & Normalization
    contents:
    - concatFCS
    - normCytof

  - title: Debarcoding
    contents:
    - dbFrame-class
    - assignPrelim
    - estCutoffs
    - applyCutoffs
    - plotYields
    - plotEvents
    - plotMahal
    - outFrames
    - outFCS

  - title: Compensation
    contents:
    - computeSpillmat
    - adaptSpillmat
    - plotSpillmat
    - compCytof

  - title: Differential Analysis
    contents:
    - daFrame-class
    - guessPanel
    - plotCounts
    - plotExprs
    - plotMedExprs
    - plotExprHeatmap
    - plotMDS
    - plotNRS
    - tSNE
    - plotSNE
    - cluster
    - mergeClusters
    - plotCodes
    - plotAbundances
    - plotClusterHeatmap
    - plotDiffHeatmap