diff --git a/.github/workflows/python-publish.yml b/.github/workflows/python-publish.yml
new file mode 100644
index 0000000..1a77661
--- /dev/null
+++ b/.github/workflows/python-publish.yml
@@ -0,0 +1,41 @@
+# This workflow will upload a Python Package using Twine when a release is created
+# For more information see: https://docs.github.com/en/actions/automating-builds-and-tests/building-and-testing-python#publishing-to-package-registries
+
+name: Upload Python Package
+
+on:
+  release:
+    types: [published]
+
+permissions:
+  contents: write
+
+jobs:
+  deploy:
+
+    runs-on: ubuntu-latest
+
+    steps:
+    - uses: actions/checkout@v4
+      with:
+        fetch-depth: 0
+    - uses: prefix-dev/setup-pixi@v0.8.0
+      with:
+        pixi-version: latest
+      env:
+        SETUPTOOLS_SCM_PRETEND_VERSION: ${{ github.ref_name }}
+    - name: Build package
+      env:
+        SETUPTOOLS_SCM_PRETEND_VERSION: ${{ github.ref_name }}
+      run: pixi run build-package
+    - name: Generate JSON schema
+      run: pixi run json-schema > biomero-schema.json
+    - name: Upload schema to release
+      env:
+        GH_TOKEN: ${{ github.token }}
+      run: gh release upload ${{ github.ref_name }} biomero-schema.json --clobber
+    - name: Publish package
+      uses: pypa/gh-action-pypi-publish@27b31702a0e7fc50959f5ad993c78deac1bdfc29
+      with:
+        user: __token__
+        password: ${{ secrets.PYPI_API_TOKEN }}
diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml
new file mode 100644
index 0000000..edab21d
--- /dev/null
+++ b/.github/workflows/test.yml
@@ -0,0 +1,23 @@
+name: Tests
+
+on:
+  push:
+  pull_request:
+
+jobs:
+  test:
+    runs-on: windows-latest
+    env:
+      PYTHONUTF8: "1"
+    steps:
+      - uses: actions/checkout@v4
+        with:
+          fetch-depth: 0
+      - uses: prefix-dev/setup-pixi@v0.8.0
+        with:
+          pixi-version: latest
+      - run: pixi run test
+      - run: pixi run test-validate
+      - run: pixi run test-parse
+      - run: pixi run test-pparse
+      - run: pixi run test-jparse
diff --git a/.gitignore b/.gitignore
index abf3f24..afcaad7 100644
--- a/.gitignore
+++ b/.gitignore
@@ -177,7 +177,7 @@ cython_debug/
 #  be found at https://github.com/github/gitignore/blob/main/Global/JetBrains.gitignore
 #  and can be added to the global gitignore or merged into this file.  For a more nuclear
 #  option (not recommended) you can uncomment the following to ignore the entire idea folder.
-#.idea/
+.idea/
 
 # Ruff stuff:
 .ruff_cache/
diff --git a/README.md b/README.md
index 3d4751b..1552636 100644
--- a/README.md
+++ b/README.md
@@ -100,23 +100,23 @@ schema =
 {
   "name": "string",                      // Required. GitHub workflow repository name (without prefix). E.g. NucleiTracking-ImageJ
   "description": "string"                // Required. Description of workflow.
-  "schema-version": "string"             // Required. Semver of schema version.
+  "schema-version": "string"             // Required. Schema format identifier. Use the current schema version constant, e.g. "biomero-0.1".
   "authors":                             // Optional. Authors list.
     [
       {
         "name": "string",                // Required. Full name of author.
-        "email": "optional",             // Optional. Email address of author.
-        "affiliations": "string[]"       // Optional. List of affiliations matching "id" of an instituttion in instititions list.
+        "email": "string",               // Optional. Email address of author.
+        "affiliations": "string[]"       // Optional. List of affiliations matching "id" of an institution in institutions list.
       }
     ],
   "institutions":                        // Optional. Institutions list.
     [
       {
         "id": "string",                  // Required. Unique institute identifier.
-        "name": "string"                 // Optional. Name of the institions. Defaults to id.
+        "name": "string"                 // Optional. Name of the institution. Defaults to id.
       }
     ],
-  "citations":                           // Optional. List of citations for the tool. Defaults to empty list.
+  "citations":                           // Required. List of citations for the tool. At least one citation required.
     [
       {
         "name": "string",                // Required. Name of the tool being cited.
@@ -127,16 +127,16 @@ schema =
     ],
   // corresponding to: https://neubias-wg5.github.io/problem_class_ground_truth.html#steps-section
   "problem-class":                       // Optional. Biaflows problem class ("object-segmentation" | "pixel-classification" | "object-counting" | "object-detection" | "filament-tree-tracing" | "filament-networks-tracing" | "landmark-detection" | "particle-tracking" | "object-tracking").
-  "container-image":                     // Required. Base cotnainer description.
+  "container-image":                     // Required. Base container description.
     {
       "image": "string",                 // Required. Image to match the name of your workflow GitHub repository (lower case only). E.g. neubiaswg5/w_nucleitracking-imagej:1.0.0
-      "type": "string",                  // Required. "oci" | "singularity" (lower case only).
+      "type": "string",                  // Required. "oci" | "singularity" | "docker" (lower case only).
       "platforms": "string"[]            // Optional. Build-time multi-platform targets.
     },
   "configuration":                       // Optional. Technical configuration.
   {
     "input_folder": "string",            // Optional. Full path where the input folder must be mounted in the container. Defaults to "/inputs".
-    "output_folder": "string",           // Optional. Full path where teh output folder must be mounted in the container. Defaults to "/outputs".
+    "output_folder": "string",           // Optional. Full path where the output folder must be mounted in the container. Defaults to "/outputs".
     "resources":                         // Optional.
       {
         "networking": "boolean",         // Optional. Whether internet connection is needed. Defaults to False.
@@ -158,14 +158,22 @@ schema =
         // references to "@id" get the value of "id" in lowercase
         // references to "@ID" get the value of "id" in uppercase
         "id": "string",                  // Required. Unique parameter identifier.
-        "type": "string",                // Required. Data type of the parameter (Number|String|ineger|flaot|boolean|string|file|image|array).
-        "name": "string",                // Optional. Human-readable display name appearing in BIAFLOWS UI (paramater dialog box). Defaults to "@id".
-        "description": "string",         // Optional. Description of paramater. Context help in BIAFLOWS UI (paramater dialog box). Soft Defaults to "".
+        "type": "string",                // Required. Data type of the parameter (Number|String|integer|float|boolean|string|file|image|array|measurement|executable).
+        "name": "string",                // Optional. Human-readable display name appearing in BIAFLOWS UI (parameter dialog box). Defaults to "@id".
+        "description": "string",         // Optional. Description of parameter. Context help in BIAFLOWS UI (parameter dialog box). Soft Defaults to "".
         "value-key": "string",           // Optional. Substitution key in CLI. Defaults to "[@ID]".
         "command-line-flag": "string",   // Optional. CLI flag. Defaults to "--@id".
-        "default-value": "string|number|boolean", // Optional. Default value in BIAFLOWS UI (paramater dialog box). Soft Defaults to empty string.
+        "default-value": "string|number|boolean", // Optional. Default value in BIAFLOWS UI (parameter dialog box). Soft Defaults to empty string.
         "optional": "boolean",           // Optional. If true, parameter not required. Soft Defaults to False.
         "set-by-server": "boolean",      // Optional. If true, parameter is server-assigned. Soft Defaults to False.
+        "value-choices": "array",        // Optional. List of allowed values for this parameter.
+        "value-choices-labels": "string[]", // Optional. Display labels for value-choices, index-aligned. When null, value is used as label.
+        "mode": "string",                // Optional. UI display mode — "beginner" | "advanced". Advanced params are collapsed by default in the UI.
+        "file-count": "string",          // Optional. For file-type inputs: "single" | "multiple".
+        "format": "string|string[]",      // Optional. Type-specific. File extension(s) — see file/image/array sections below.
+        "sub-type": "string|string[]",   // Optional. Type-specific. Image sub-type(s) — see image section below.
+        "output-dir-set": "boolean",     // Optional. If true, this parameter specifies the output directory. Biomero will supply the data/out path.
+        "file-attachment": "boolean",    // Optional. If true, this is a user-supplied OMERO file-attachment input (annotation ID). Biomero will download the file from OMERO and transfer it to the HPC at runtime, then inject the resolved path as the CLI argument.
       }
     ]
   "outputs":                           // Optional. List of output parameter descriptors.
@@ -174,14 +182,20 @@ schema =
         // references to "@id" get the value of "id" in lowercase
         // references to "@ID" get the value of "id" in uppercase
         "id": "string",                  // Required. Unique parameter identifier.
-        "type": "string",                // Required. Data type of the parameter (Number|String).
-        "name": "string",                // Optional. Human-readable display name appearing in BIAFLOWS UI (paramater dialog box). Defaults to "@id".
-        "description": "string",         // Optional. Description of paramater. Context help in BIAFLOWS UI (paramater dialog box). Soft Defaults to "".
+        "type": "string",                // Required. Data type of the parameter (Number|String|integer|float|boolean|string|file|image|array|measurement|executable).
+        "name": "string",                // Optional. Human-readable display name appearing in BIAFLOWS UI (parameter dialog box). Defaults to "@id".
+        "description": "string",         // Optional. Description of parameter. Context help in BIAFLOWS UI (parameter dialog box). Soft Defaults to "".
         "value-key": "string",           // Optional. Substitution key in CLI. Defaults to "[@ID]".
         "command-line-flag": "string",   // Optional. CLI flag. Defaults to "--@id".
-        "default-value": "string|number|boolean", // Optional. Default value in BIAFLOWS UI (paramater dialog box). Soft Defaults to empty string.
+        "default-value": "string|number|boolean", // Optional. Default value in BIAFLOWS UI (parameter dialog box). Soft Defaults to empty string.
         "optional": "boolean",           // Optional. If true, parameter not required. Soft Defaults to False.
         "set-by-server": "boolean",      // Optional. If true, parameter is server-assigned. Soft Defaults to False.
+        "value-choices": "array",        // Optional. List of allowed values for this parameter.
+        "value-choices-labels": "string[]", // Optional. Display labels for value-choices, index-aligned. When null, value is used as label.
+        "mode": "string",                // Optional. UI display mode — "beginner" | "advanced". Advanced params are collapsed by default in the UI.
+        "file-count": "string",          // Optional. For file-type outputs: "single" | "multiple".
+        "format": "string|string[]",      // Optional. Type-specific. File extension(s) — see file/image/array sections below.
+        "sub-type": "string|string[]",   // Optional. Type-specific. Image sub-type(s) — see image section below.
       }
     ]
   "command-line": "string"               // Required. e.g. "python wrapper.py CYTOMINE_HOST CYTOMINE_PUBLIC_KEY CYTOMINE_PRIVATE_KEY CYTOMINE_ID_PROJECT CYTOMINE_ID_SOFTWARE IJ_RADIUS IJ_THRESHOLD".
@@ -189,17 +203,24 @@ schema =
 
 file =
 {
-  "format": "string"                    // Required. Extension of the file type (.csv).
+  "format": "string"                    // Optional. Extension of the file type (e.g. .csv).
 }
 
 image =
 {
-  "sub-type": "string",                 // Required. Image type (grayscale|color|binary|labeled|class).
-  "format": "string"                    // Required. Extension of the image type (tif, png, jpg, jpeg, tiff, ometiff).
+  "sub-type": "string|string[]",        // Optional. Image type (grayscale|color|binary|labeled|class|plate). Can be a single value or list.
+  "format": "string|string[]"           // Optional. Extension of the image type (tif|png|jpg|jpeg|tiff|ometiff|zarr|omezarr|ome.zarr|ome-zarr). Can be a single value or list.
 }
 
 array =
 {
-  "format": "string"                    // Required. Extension of the file type (npy, npz)
+  "format": "string"                    // Optional. Extension of the file type (npy, npz)
 }
 ```
+
+## Computed Fields
+
+The following fields are automatically computed from the schema and included in the JSON output:
+
+- **`requires-zarr`** (`boolean`): `true` when any image input uses a ZARR format (`zarr`, `omezarr`, `ome.zarr`, `ome-zarr`) or has `plate` sub-type.
+- **`requires-plate`** (`boolean`): `true` when any image input has `plate` sub-type.
diff --git a/pixi.lock b/pixi.lock
index 47721b3..aa8ee3d 100644
--- a/pixi.lock
+++ b/pixi.lock
@@ -5,6 +5,8 @@ environments:
     - url: https://conda.anaconda.org/conda-forge/
     indexes:
     - https://pypi.org/simple
+    options:
+      pypi-prerelease-mode: if-necessary-or-explicit
     packages:
       osx-64:
       - conda: https://conda.anaconda.org/conda-forge/osx-64/bzip2-1.0.8-h500dc9f_8.conda
@@ -25,19 +27,75 @@ environments:
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+  - typing-extensions>=4.14.1
+  requires_python: '>=3.9'
 - pypi: https://files.pythonhosted.org/packages/c7/21/705964c7812476f378728bdf590ca4b771ec72385c533964653c68e86bdc/pygments-2.19.2-py3-none-any.whl
   name: pygments
   version: 2.19.2
@@ -272,6 +540,38 @@ packages:
   requires_dist:
   - colorama>=0.4.6 ; extra == 'windows-terminal'
   requires_python: '>=3.8'
+- pypi: https://files.pythonhosted.org/packages/f4/7e/a72dd26f3b0f4f2bf1dd8923c85f7ceb43172af56d63c7383eb62b332364/pygments-2.20.0-py3-none-any.whl
+  name: pygments
+  version: 2.20.0
+  sha256: 81a9e26dd42fd28a23a2d169d86d7ac03b46e2f8b59ed4698fb4785f946d0176
+  requires_dist:
+  - colorama>=0.4.6 ; extra == 'windows-terminal'
+  requires_python: '>=3.9'
+- pypi: https://files.pythonhosted.org/packages/bd/24/12818598c362d7f300f18e74db45963dbcb85150324092410c8b49405e42/pyproject_hooks-1.2.0-py3-none-any.whl
+  name: pyproject-hooks
+  version: 1.2.0
+  sha256: 9e5c6bfa8dcc30091c74b0cf803c81fdd29d94f01992a7707bc97babb1141913
+  requires_python: '>=3.7'
+- pypi: https://files.pythonhosted.org/packages/d4/24/a372aaf5c9b7208e7112038812994107bc65a84cd00e0354a88c2c77a617/pytest-9.0.3-py3-none-any.whl
+  name: pytest
+  version: 9.0.3
+  sha256: 2c5efc453d45394fdd706ade797c0a81091eccd1d6e4bccfcd476e2b8e0ab5d9
+  requires_dist:
+  - colorama>=0.4 ; sys_platform == 'win32'
+  - exceptiongroup>=1 ; python_full_version < '3.11'
+  - iniconfig>=1.0.1
+  - packaging>=22
+  - pluggy>=1.5,<2
+  - pygments>=2.7.2
+  - tomli>=1 ; python_full_version < '3.11'
+  - argcomplete ; extra == 'dev'
+  - attrs>=19.2 ; extra == 'dev'
+  - hypothesis>=3.56 ; extra == 'dev'
+  - mock ; extra == 'dev'
+  - requests ; extra == 'dev'
+  - setuptools ; extra == 'dev'
+  - xmlschema ; extra == 'dev'
+  requires_python: '>=3.10'
 - conda: https://conda.anaconda.org/conda-forge/osx-64/python-3.14.0-hf88997e_102_cp314.conda
   build_number: 102
   sha256: 2470866eee70e75d6be667aa537424b63f97c397a0a90f05f2bab347b9ed5a51
@@ -297,6 +597,31 @@ packages:
   size: 14427639
   timestamp: 1761177864469
   python_site_packages_path: lib/python3.14/site-packages
+- conda: https://conda.anaconda.org/conda-forge/win-64/python-3.14.4-h4b44e0e_100_cp314.conda
+  build_number: 100
+  sha256: e258d626b0ba778abb319f128de4c1211306fe86fe0803166817b1ce2514c920
+  md5: 40b6a8f438afb5e7b314cc5c4a43cd84
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+  - liblzma >=5.8.2,<6.0a0
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+  - libsqlite >=3.52.0,<4.0a0
+  - libzlib >=1.3.2,<2.0a0
+  - openssl >=3.5.6,<4.0a0
+  - python_abi 3.14.* *_cp314
+  - tk >=8.6.13,<8.7.0a0
+  - tzdata
+  - ucrt >=10.0.20348.0
+  - vc >=14.3,<15
+  - vc14_runtime >=14.44.35208
+  - zstd >=1.5.7,<1.6.0a0
+  license: Python-2.0
+  purls: []
+  size: 18055445
+  timestamp: 1775615317758
+  python_site_packages_path: Lib/site-packages
 - conda: https://conda.anaconda.org/conda-forge/noarch/python_abi-3.14-8_cp314.conda
   build_number: 8
   sha256: ad6d2e9ac39751cc0529dd1566a26751a0bf2542adb0c232533d32e176e21db5
@@ -308,6 +633,16 @@ packages:
   purls: []
   size: 6989
   timestamp: 1752805904792
+- pypi: https://files.pythonhosted.org/packages/23/20/bb6982b26a40bb43951265ba29d4c246ef0ff59c9fdcdf0ed04e0687de4d/pyyaml-6.0.3-cp314-cp314-win_amd64.whl
+  name: pyyaml
+  version: 6.0.3
+  sha256: 4a2e8cebe2ff6ab7d1050ecd59c25d4c8bd7e6f400f5f82b96557ac0abafd0ac
+  requires_python: '>=3.8'
+- pypi: https://files.pythonhosted.org/packages/9d/8c/f4bd7f6465179953d3ac9bc44ac1a8a3e6122cf8ada906b4f96c60172d43/pyyaml-6.0.3-cp314-cp314-macosx_10_13_x86_64.whl
+  name: pyyaml
+  version: 6.0.3
+  sha256: 8d1fab6bb153a416f9aeb4b8763bc0f22a5586065f86f7664fc23339fc1c1fac
+  requires_python: '>=3.8'
 - conda: https://conda.anaconda.org/conda-forge/osx-64/readline-8.2-h7cca4af_2.conda
   sha256: 53017e80453c4c1d97aaf78369040418dea14cf8f46a2fa999f31bd70b36c877
   md5: 342570f8e02f2f022147a7f841475784
@@ -336,11 +671,93 @@ packages:
   - markdown-it-py>=2.2.0
   - pygments>=2.13.0,<3.0.0
   requires_python: '>=3.8.0'
+- pypi: https://files.pythonhosted.org/packages/82/3b/64d4899d73f91ba49a8c18a8ff3f0ea8f1c1d75481760df8c68ef5235bf5/rich-15.0.0-py3-none-any.whl
+  name: rich
+  version: 15.0.0
+  sha256: 33bd4ef74232fb73fe9279a257718407f169c09b78a87ad3d296f548e27de0bb
+  requires_dist:
+  - ipywidgets>=7.5.1,<9 ; extra == 'jupyter'
+  - markdown-it-py>=2.2.0
+  - pygments>=2.13.0,<3.0.0
+  requires_python: '>=3.9.0'
 - pypi: https://files.pythonhosted.org/packages/08/47/ffe8cd7a6a02833b10623bf765fbb57ce977e9a4318ca0e8cf97e9c3d2b3/rpds_py-0.28.0-cp314-cp314-macosx_10_12_x86_64.whl
   name: rpds-py
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   sha256: dcdcb890b3ada98a03f9f2bb108489cdc7580176cb73b4f2d789e9a1dac1d472
   requires_python: '>=3.10'
+- pypi: https://files.pythonhosted.org/packages/3e/d2/1aaac33287e8cfb07aab2e6b8ac1deca62f6f65411344f1433c55e6f3eb8/rpds_py-0.30.0-cp314-cp314-win_amd64.whl
+  name: rpds-py
+  version: 0.30.0
+  sha256: 95f0802447ac2d10bcc69f6dc28fe95fdf17940367b21d34e34c737870758950
+  requires_python: '>=3.10'
+- pypi: https://files.pythonhosted.org/packages/9d/76/f789f7a86709c6b087c5a2f52f911838cad707cc613162401badc665acfe/setuptools-82.0.1-py3-none-any.whl
+  name: setuptools
+  version: 82.0.1
+  sha256: a59e362652f08dcd477c78bb6e7bd9d80a7995bc73ce773050228a348ce2e5bb
+  requires_dist:
+  - pytest>=6,!=8.1.* ; extra == 'test'
+  - virtualenv>=13.0.0 ; extra == 'test'
+  - wheel>=0.44.0 ; extra == 'test'
+  - pip>=19.1 ; extra == 'test'
+  - packaging>=24.2 ; extra == 'test'
+  - jaraco-envs>=2.2 ; extra == 'test'
+  - pytest-xdist>=3 ; extra == 'test'
+  - jaraco-path>=3.7.2 ; extra == 'test'
+  - build[virtualenv]>=1.0.3 ; extra == 'test'
+  - filelock>=3.4.0 ; extra == 'test'
+  - ini2toml[lite]>=0.14 ; extra == 'test'
+  - tomli-w>=1.0.0 ; extra == 'test'
+  - pytest-timeout ; extra == 'test'
+  - pytest-perf ; sys_platform != 'cygwin' and extra == 'test'
+  - jaraco-develop>=7.21 ; python_full_version >= '3.9' and sys_platform != 'cygwin' and extra == 'test'
+  - pytest-home>=0.5 ; extra == 'test'
+  - pytest-subprocess ; extra == 'test'
+  - pyproject-hooks!=1.1 ; extra == 'test'
+  - jaraco-test>=5.5 ; extra == 'test'
+  - sphinx>=3.5 ; extra == 'doc'
+  - jaraco-packaging>=9.3 ; extra == 'doc'
+  - rst-linker>=1.9 ; extra == 'doc'
+  - furo ; extra == 'doc'
+  - sphinx-lint ; extra == 'doc'
+  - jaraco-tidelift>=1.4 ; extra == 'doc'
+  - pygments-github-lexers==0.0.5 ; extra == 'doc'
+  - sphinx-favicon ; extra == 'doc'
+  - sphinx-inline-tabs ; extra == 'doc'
+  - sphinx-reredirects ; extra == 'doc'
+  - sphinxcontrib-towncrier ; extra == 'doc'
+  - sphinx-notfound-page>=1,<2 ; extra == 'doc'
+  - pyproject-hooks!=1.1 ; extra == 'doc'
+  - towncrier<24.7 ; extra == 'doc'
+  - packaging>=24.2 ; extra == 'core'
+  - more-itertools>=8.8 ; extra == 'core'
+  - jaraco-text>=3.7 ; extra == 'core'
+  - importlib-metadata>=6 ; python_full_version < '3.10' and extra == 'core'
+  - tomli>=2.0.1 ; python_full_version < '3.11' and extra == 'core'
+  - wheel>=0.43.0 ; extra == 'core'
+  - jaraco-functools>=4 ; extra == 'core'
+  - more-itertools ; extra == 'core'
+  - pytest-checkdocs>=2.4 ; extra == 'check'
+  - pytest-ruff>=0.2.1 ; sys_platform != 'cygwin' and extra == 'check'
+  - ruff>=0.13.0 ; sys_platform != 'cygwin' and extra == 'check'
+  - pytest-cov ; extra == 'cover'
+  - pytest-enabler>=2.2 ; extra == 'enabler'
+  - pytest-mypy ; extra == 'type'
+  - mypy==1.18.* ; extra == 'type'
+  - importlib-metadata>=7.0.2 ; python_full_version < '3.10' and extra == 'type'
+  - jaraco-develop>=7.21 ; sys_platform != 'cygwin' and extra == 'type'
+  requires_python: '>=3.9'
+- pypi: https://files.pythonhosted.org/packages/5c/e1/342c4434df56aa537f6ce7647eefee521d96fbb828b08acd709865767652/setuptools_scm-10.0.5-py3-none-any.whl
+  name: setuptools-scm
+  version: 10.0.5
+  sha256: f611037d8aae618221503b8fa89319f073438252ae3420e01c9ceec249131a0a
+  requires_dist:
+  - vcs-versioning>=1.0.0.dev0
+  - packaging>=20
+  - setuptools
+  - tomli>=1 ; python_full_version < '3.11'
+  - typing-extensions ; python_full_version < '3.11'
+  - rich ; extra == 'rich'
+  requires_python: '>=3.10'
 - conda: https://conda.anaconda.org/conda-forge/osx-64/tk-8.6.13-hf689a15_2.conda
   sha256: b24468006a96b71a5f4372205ea7ec4b399b0f2a543541e86f883de54cd623fc
   md5: 9864891a6946c2fe037c02fca7392ab4
@@ -352,6 +769,18 @@ packages:
   purls: []
   size: 3259809
   timestamp: 1748387843735
+- conda: https://conda.anaconda.org/conda-forge/win-64/tk-8.6.13-h6ed50ae_3.conda
+  sha256: 0e79810fae28f3b69fe7391b0d43f5474d6bd91d451d5f2bde02f55ae481d5e3
+  md5: 0481bfd9814bf525bd4b3ee4b51494c4
+  depends:
+  - ucrt >=10.0.20348.0
+  - vc >=14.3,<15
+  - vc14_runtime >=14.44.35208
+  license: TCL
+  license_family: BSD
+  purls: []
+  size: 3526350
+  timestamp: 1769460339384
 - pypi: https://files.pythonhosted.org/packages/18/67/36e9267722cc04a6b9f15c7f3441c2363321a3ea07da7ae0c0707beb2a9c/typing_extensions-4.15.0-py3-none-any.whl
   name: typing-extensions
   version: 4.15.0
@@ -371,6 +800,69 @@ packages:
   purls: []
   size: 122968
   timestamp: 1742727099393
+- conda: https://conda.anaconda.org/conda-forge/noarch/tzdata-2025c-hc9c84f9_1.conda
+  sha256: 1d30098909076af33a35017eed6f2953af1c769e273a0626a04722ac4acaba3c
+  md5: ad659d0a2b3e47e38d829aa8cad2d610
+  license: LicenseRef-Public-Domain
+  purls: []
+  size: 119135
+  timestamp: 1767016325805
+- conda: https://conda.anaconda.org/conda-forge/win-64/ucrt-10.0.26100.0-h57928b3_0.conda
+  sha256: 3005729dce6f3d3f5ec91dfc49fc75a0095f9cd23bab49efb899657297ac91a5
+  md5: 71b24316859acd00bdb8b38f5e2ce328
+  constrains:
+  - vc14_runtime >=14.29.30037
+  - vs2015_runtime >=14.29.30037
+  license: LicenseRef-MicrosoftWindowsSDK10
+  purls: []
+  size: 694692
+  timestamp: 1756385147981
+- conda: https://conda.anaconda.org/conda-forge/win-64/vc-14.3-h41ae7f8_34.conda
+  sha256: 9dc40c2610a6e6727d635c62cced5ef30b7b30123f5ef67d6139e23d21744b3a
+  md5: 1e610f2416b6acdd231c5f573d754a0f
+  depends:
+  - vc14_runtime >=14.44.35208
+  track_features:
+  - vc14
+  license: BSD-3-Clause
+  license_family: BSD
+  purls: []
+  size: 19356
+  timestamp: 1767320221521
+- conda: https://conda.anaconda.org/conda-forge/win-64/vc14_runtime-14.44.35208-h818238b_34.conda
+  sha256: 02732f953292cce179de9b633e74928037fa3741eb5ef91c3f8bae4f761d32a5
+  md5: 37eb311485d2d8b2c419449582046a42
+  depends:
+  - ucrt >=10.0.20348.0
+  - vcomp14 14.44.35208 h818238b_34
+  constrains:
+  - vs2015_runtime 14.44.35208.* *_34
+  license: LicenseRef-MicrosoftVisualCpp2015-2022Runtime
+  license_family: Proprietary
+  purls: []
+  size: 683233
+  timestamp: 1767320219644
+- conda: https://conda.anaconda.org/conda-forge/win-64/vcomp14-14.44.35208-h818238b_34.conda
+  sha256: 878d5d10318b119bd98ed3ed874bd467acbe21996e1d81597a1dbf8030ea0ce6
+  md5: 242d9f25d2ae60c76b38a5e42858e51d
+  depends:
+  - ucrt >=10.0.20348.0
+  constrains:
+  - vs2015_runtime 14.44.35208.* *_34
+  license: LicenseRef-MicrosoftVisualCpp2015-2022Runtime
+  license_family: Proprietary
+  purls: []
+  size: 115235
+  timestamp: 1767320173250
+- pypi: https://files.pythonhosted.org/packages/e6/60/73603fbcdbe5e803855bcce4414f94eaeed449083bd8183e67161af78188/vcs_versioning-1.1.1-py3-none-any.whl
+  name: vcs-versioning
+  version: 1.1.1
+  sha256: b541e2ba79fc6aaa3850f8a7f88af43d97c1c80649c01142ee4146eddbc599e4
+  requires_dist:
+  - packaging>=20
+  - tomli>=1 ; python_full_version < '3.11'
+  - typing-extensions ; python_full_version < '3.11'
+  requires_python: '>=3.10'
 - conda: https://conda.anaconda.org/conda-forge/osx-64/zstd-1.5.7-h8210216_2.conda
   sha256: c171c43d0c47eed45085112cb00c8c7d4f0caa5a32d47f2daca727e45fb98dca
   md5: cd60a4a5a8d6a476b30d8aa4bb49251a
@@ -382,3 +874,16 @@ packages:
   purls: []
   size: 485754
   timestamp: 1742433356230
+- conda: https://conda.anaconda.org/conda-forge/win-64/zstd-1.5.7-h534d264_6.conda
+  sha256: 368d8628424966fd8f9c8018326a9c779e06913dd39e646cf331226acc90e5b2
+  md5: 053b84beec00b71ea8ff7a4f84b55207
+  depends:
+  - vc >=14.3,<15
+  - vc14_runtime >=14.44.35208
+  - ucrt >=10.0.20348.0
+  - libzlib >=1.3.1,<2.0a0
+  license: BSD-3-Clause
+  license_family: BSD
+  purls: []
+  size: 388453
+  timestamp: 1764777142545
diff --git a/pyproject.toml b/pyproject.toml
index b28a857..8195bef 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -1,21 +1,28 @@
 [build-system]
-requires = ["setuptools>=45", "wheel"]
+requires = ["setuptools>=45", "wheel", "setuptools-scm>=8"]
 build-backend = "setuptools.build_meta"
 
 [project]
 name = "biomero-schema"
-version = "0.1.0"
+dynamic = ["version"]
 description = "CLI tool to validate and parse JSON files against a schema"
 authors = [{name = "Schema Validator", email = "validator@example.com"}]
 readme = "README.md"
-requires-python = ">=3.8"
+requires-python = ">=3.11"
 dependencies = [
     "pydantic>=2.0.0",
     "click>=8.0.0",
     "jsonschema>=4.0.0",
-    "rich>=13.0.0"
+    "rich>=13.0.0",
+    "pyyaml>=6.0.3"
 ]
 
+[project.optional-dependencies]
+test = ["pytest>=8.0.0"]
+
+[tool.pytest.ini_options]
+testpaths = ["tests"]
+
 [project.scripts]
 biomero-schema = "biomero_schema.cli:cli"
 
@@ -27,14 +34,21 @@ where = ["src"]
 
 [tool.pixi.workspace]
 channels = ["conda-forge"]
-platforms = ["osx-64"]
+platforms = ["osx-64", "win-64"]
 
 [tool.pixi.pypi-dependencies]
 biomero-schema = { path = ".", editable = true }
+pytest = ">=8.0.0"
+setuptools-scm = ">=8"
+build = ">=1.0.0"
 
 [tool.pixi.tasks]
 json-schema = { cmd = ["biomero-schema", "schema"], description = "Print the json schema generated from pydantic model" }
+build-package = { cmd = ["python", "-m", "build"], description = "Build the package wheel and sdist" }
 test-parse = { cmd = ["biomero-schema", "parse", "tests/example_workflow.json"], description = "Parse and run pydantic validation on test file" }
 test-pparse = { cmd = ["biomero-schema", "parse", "tests/example_workflow.json", "--pretty"], description = "Parse, validate, and show detailed info on test file" }
 test-jparse = { cmd = ["biomero-schema", "parse", "tests/example_workflow.json", "--json"], description = "Parse, validate, and show test file json contents" }
 test-validate = { cmd = ["biomero-schema", "validate", "tests/example_workflow.json"], description = "Run json schema validation on test file" }
+test = { cmd = ["pytest", "-v"], description = "Run all tests" }
+
+[tool.setuptools_scm]
diff --git a/src/biomero_schema/__init__.py b/src/biomero_schema/__init__.py
index 6e0e97e..ff4c6d7 100644
--- a/src/biomero_schema/__init__.py
+++ b/src/biomero_schema/__init__.py
@@ -1,2 +1,11 @@
 """Biomero schema package."""
-__version__ = "0.1.0"
+from importlib.metadata import version, PackageNotFoundError
+
+try:
+    __version__ = version("biomero-schema")
+except PackageNotFoundError:
+    __version__ = "unknown"
+
+from biomero_schema.models import BIOMERO_SCHEMA_VERSION
+
+__all__ = ["__version__", "BIOMERO_SCHEMA_VERSION"]
diff --git a/src/biomero_schema/cli.py b/src/biomero_schema/cli.py
index 2056bed..c509803 100644
--- a/src/biomero_schema/cli.py
+++ b/src/biomero_schema/cli.py
@@ -1,23 +1,29 @@
 """CLI for biomero schema validation and parsing."""
 import json
+import os.path
 import sys
 from typing import Any, Dict
+import yaml
 
 import click
 import jsonschema
 from rich.console import Console
 from rich.pretty import pprint
 
-from .models import WorkflowSchema
+from biomero_schema.models import WorkflowSchema
 
 console = Console()
 
 
-def load_json_file(file_path: str) -> Dict[str, Any]:
-    """Load JSON file and return parsed content."""
+def load_descriptor_file(file_path: str) -> Dict[str, Any]:
+    """Load descriptor file and return parsed content."""
     try:
+        ext = os.path.splitext(file_path)[1]
         with open(file_path) as f:
-            return json.load(f)
+            if ext in (".yaml", ".yml"):
+                return yaml.safe_load(f)
+            else:
+                return json.load(f)
     except FileNotFoundError:
         console.print(f"[red]Error: File '{file_path}' not found[/red]")
         sys.exit(1)
@@ -40,14 +46,14 @@ def schema():
 
 
 @cli.command()
-@click.argument("json_file", type=click.Path(exists=True))
-def validate(json_file: str):
+@click.argument("descriptor_file", type=click.Path(exists=True))
+def validate(descriptor_file: str):
     """Validate a JSON file against the JSON schema."""
-    console.print(f"[blue]Validating {json_file}...[/blue]")
+    console.print(f"[blue]Validating {descriptor_file}...[/blue]")
     
     # Load schema and JSON file
     schema = WorkflowSchema.model_json_schema()
-    data = load_json_file(json_file)
+    data = load_descriptor_file(descriptor_file)
     
     try:
         jsonschema.validate(data, schema)
@@ -64,15 +70,15 @@ def validate(json_file: str):
 
 
 @cli.command()
-@click.argument("json_file", type=click.Path(exists=True))
+@click.argument("descriptor_file", type=click.Path(exists=True))
 @click.option("--pretty", is_flag=True, help="Pretty print the parsed object")
 @click.option("--json", "output_json", is_flag=True, help="Output as JSON")
-def parse(json_file: str, pretty: bool, output_json: bool):
-    """Parse a JSON file into a Pydantic representation."""
-    console.print(f"[blue]Parsing {json_file}...[/blue]")
+def parse(descriptor_file: str, pretty: bool, output_json: bool):
+    """Parse a descriptor file into a Pydantic representation."""
+    console.print(f"[blue]Parsing {descriptor_file}...[/blue]")
     
-    # Load and validate JSON file
-    data = load_json_file(json_file)
+    # Load and validate descriptor file
+    data = load_descriptor_file(descriptor_file)
     
     try:
         # Parse into Pydantic model
diff --git a/src/biomero_schema/models.py b/src/biomero_schema/models.py
index d3890ab..afbe8aa 100644
--- a/src/biomero_schema/models.py
+++ b/src/biomero_schema/models.py
@@ -1,6 +1,12 @@
 """Pydantic models for the workflow schema."""
 from typing import List, Optional, Union, Literal
-from pydantic import BaseModel, Field
+from pydantic import BaseModel, Field, computed_field, ConfigDict
+
+_ZARR_FORMATS = frozenset({'zarr', 'omezarr', 'ome.zarr', 'ome-zarr'})
+
+# The schema format identifier embedded in every biomero-schema descriptor.
+# Increment the minor version on breaking schema changes.
+BIOMERO_SCHEMA_VERSION = "biomero-0.1"
 
 
 class Author(BaseModel):
@@ -27,7 +33,7 @@ class Citation(BaseModel):
 class ContainerImage(BaseModel):
     """Container image model."""
     image: str = Field(..., description="Image to match the name of your workflow GitHub repository (lower case only)")
-    type: Literal["oci", "singularity"] = Field(..., description="Container type")
+    type: Literal["oci", "singularity", "docker"] = Field(..., description="Container type")
     platforms: Optional[List[str]] = Field(None, description="Build-time multi-platform targets")
 
 
@@ -63,7 +69,7 @@ class FileParameter(BaseModel):
 class ImageParameter(BaseModel):
     """Image parameter specific fields."""
     sub_type: Literal["grayscale", "color", "binary", "labeled", "class"] = Field(..., alias="sub-type", description="Image type")
-    format: Literal["tif", "png", "jpg", "jpeg", "tiff", "ometiff"] = Field(..., description="Extension of the image type")
+    format: Literal["tif", "png", "jpg", "jpeg", "tiff", "ometiff", "zarr", "omezarr"] = Field(..., description="Extension of the image type")
 
 
 class ArrayParameter(BaseModel):
@@ -74,7 +80,7 @@ class ArrayParameter(BaseModel):
 class Parameter(BaseModel):
     """Parameter model."""
     id: str = Field(..., description="Unique parameter identifier")
-    type: Literal["Number", "String", "integer", "float", "boolean", "string", "file", "image", "array"] = Field(..., description="Data type of the parameter")
+    type: Literal["Number", "String", "integer", "float", "boolean", "string", "file", "image", "array", "measurement", "executable"] = Field(..., description="Data type of the parameter")
     name: Optional[str] = Field(None, description="Human-readable display name appearing in BIAFLOWS UI (parameter dialog box). Defaults to '@id'")
     description: Optional[str] = Field(None, description="Description of parameter. Context help in BIAFLOWS UI (parameter dialog box). Soft Defaults to ''")
     value_key: Optional[str] = Field(None, alias="value-key", description="Substitution key in CLI. Defaults to '[@ID]'")
@@ -87,16 +93,23 @@ class Parameter(BaseModel):
     )
     optional: Optional[bool] = Field(None, description="If true, parameter not required. Soft Defaults to False")
     set_by_server: Optional[bool] = Field(None, alias="set-by-server", description="If true, parameter is server-assigned. Soft Defaults to False")
-    
+    value_choices: Optional[List[Union[str, int, float, bool]]] = Field(None, alias="value-choices", description="List of allowed values for this parameter")
+    output_dir_set: Optional[bool] = Field(None, alias="output-dir-set", description="If true, this parameter specifies the output directory (bilayers output_dir_set flag). Biomero will supply the data/out path.")
+    file_attachment: Optional[bool] = Field(None, alias="file-attachment", description="If true, this is a user-supplied OMERO file-attachment input (annotation ID). Biomero will download the file from OMERO and transfer it to the HPC at runtime, then inject the resolved path as the CLI argument.")
+
+    mode: Optional[Literal["beginner", "advanced"]] = Field(None, description="UI display mode — 'advanced' params are collapsed by default in the UI")
+
     # Type-specific fields
-    format: Optional[str] = Field(None, description="Format for file/image/array types")
-    sub_type: Optional[str] = Field(None, alias="sub-type", description="Sub-type for image parameters")
+    format: Optional[Union[str, List[str]]] = Field(None, description="Format for file/image/array types")
+    file_count: Optional[Literal["single", "multiple"]] = Field(None, alias="file-count", description="For file-type inputs: whether user selects a single file or multiple files")
+    sub_type: Optional[Union[str, List[str]]] = Field(None, alias="sub-type", description="Sub-type for image parameters")
+    value_choices_labels: Optional[List[Optional[str]]] = Field(None, alias="value-choices-labels", description="Display labels for value_choices, index-aligned. When None, value is used as label.")
 
 
 class OutputParameter(BaseModel):
     """Output parameter model."""
     id: str = Field(..., description="Unique parameter identifier")
-    type: Literal["Number", "String"] = Field(..., description="Data type of the parameter")
+    type: Literal["Number", "String", "integer", "float", "boolean", "string", "file", "image", "array", "measurement", "executable"] = Field(..., description="Data type of the parameter")
     name: Optional[str] = Field(None, description="Human-readable display name appearing in BIAFLOWS UI (parameter dialog box). Defaults to '@id'")
     description: Optional[str] = Field(None, description="Description of parameter. Context help in BIAFLOWS UI (parameter dialog box). Soft Defaults to ''")
     value_key: Optional[str] = Field(None, alias="value-key", description="Substitution key in CLI. Defaults to '[@ID]'")
@@ -109,13 +122,26 @@ class OutputParameter(BaseModel):
     )
     optional: Optional[bool] = Field(None, description="If true, parameter not required. Soft Defaults to False")
     set_by_server: Optional[bool] = Field(None, alias="set-by-server", description="If true, parameter is server-assigned. Soft Defaults to False")
+    value_choices: Optional[List[Union[str, int, float, bool]]] = Field(None, alias="value-choices", description="List of allowed values for this parameter")
+
+    mode: Optional[Literal["beginner", "advanced"]] = Field(None, description="UI display mode — 'advanced' params are collapsed by default in the UI")
+
+    # Type-specific fields
+    format: Optional[Union[str, List[str]]] = Field(None, description="Format for file/image/array types")
+    file_count: Optional[Literal["single", "multiple"]] = Field(
+        None,
+        alias="file-count",
+        description="Emits a single file or multiple files",
+    )
+    sub_type: Optional[Union[str, List[str]]] = Field(None, alias="sub-type", description="Sub-type for image parameters")
+    value_choices_labels: Optional[List[Optional[str]]] = Field(None, alias="value-choices-labels", description="Display labels for value_choices, index-aligned. When None, value is used as label.")
 
 
 class WorkflowSchema(BaseModel):
     """Main workflow schema model."""
     name: str = Field(..., description="GitHub workflow repository name (without prefix). E.g. NucleiTracking-ImageJ")
     description: str = Field(..., description="Description of workflow")
-    schema_version: str = Field(..., alias="schema-version", description="Semver of schema version")
+    schema_version: str = Field(..., alias="schema-version", description="Schema format identifier, e.g. 'biomero-0.1'")
     authors: List[Author] = Field([], description="Authors list")
     institutions: List[Institution] = Field([], description="Institutions list")
     citations: List[Citation] = Field([], min_length=1, description="List of citations for the tool. At least one required")
@@ -136,6 +162,37 @@ class WorkflowSchema(BaseModel):
     outputs: List[OutputParameter] = Field([], description="List of output parameter descriptors")
     command_line: str = Field(..., alias="command-line", description="Command line template")
 
-    class Config:
-        populate_by_name = True
-        validate_by_name = True
+    @computed_field(alias="requires-zarr")
+    @property
+    def requires_zarr(self) -> bool:
+        """True when any image input uses a ZARR format or has plate subtype."""
+        for inp in self.inputs:
+            if inp.type != 'image':
+                continue
+            fmt = inp.format or []
+            if isinstance(fmt, str):
+                fmt = [fmt]
+            if any(f in _ZARR_FORMATS for f in fmt):
+                return True
+            sub = inp.sub_type or []
+            if isinstance(sub, str):
+                sub = [sub]
+            if 'plate' in sub:
+                return True
+        return False
+
+    @computed_field(alias="requires-plate")
+    @property
+    def requires_plate(self) -> bool:
+        """True when any image input has plate subtype."""
+        for inp in self.inputs:
+            if inp.type != 'image':
+                continue
+            sub = inp.sub_type or []
+            if isinstance(sub, str):
+                sub = [sub]
+            if 'plate' in sub:
+                return True
+        return False
+
+    model_config = ConfigDict(populate_by_name=True, validate_by_alias=True)
diff --git a/tests/example_workflow.json b/tests/example_workflow.json
index 3218453..7201064 100644
--- a/tests/example_workflow.json
+++ b/tests/example_workflow.json
@@ -1,7 +1,7 @@
 {
   "name": "NucleiTracking-ImageJ",
   "description": "ImageJ workflow for nuclei tracking in time-lapse microscopy images",
-  "schema-version": "1.0.0",
+  "schema-version": "biomero-0.1",
   "authors": [
     {
       "name": "John Doe",
diff --git a/tests/test_computed_fields.py b/tests/test_computed_fields.py
new file mode 100644
index 0000000..02c96a5
--- /dev/null
+++ b/tests/test_computed_fields.py
@@ -0,0 +1,242 @@
+"""Tests for WorkflowSchema.requires_zarr and requires_plate computed fields."""
+import json
+import pytest
+from pathlib import Path
+from biomero_schema.models import WorkflowSchema
+
+
+TESTS_DIR = Path(__file__).parent
+
+
+def load_example() -> dict:
+    return json.loads((TESTS_DIR / "example_workflow.json").read_text())
+
+
+def make_schema(image_inputs: list) -> WorkflowSchema:
+    """Build a minimal WorkflowSchema with the given image input list."""
+    base = load_example()
+    base["inputs"] = image_inputs
+    return WorkflowSchema.model_validate(base)
+
+
+def image_input(fmt=None, subtype=None) -> dict:
+    inp = {
+        "id": "input_image",
+        "type": "image",
+        "name": "Input",
+        "value-key": "[INPUT_IMAGE]",
+        "command-line-flag": "--input",
+    }
+    if fmt is not None:
+        inp["format"] = fmt
+    if subtype is not None:
+        inp["sub-type"] = subtype
+    return inp
+
+
+# ---------------------------------------------------------------------------
+# requires_zarr
+# ---------------------------------------------------------------------------
+
+class TestRequiresZarr:
+    def test_false_for_tiff(self):
+        schema = make_schema([image_input(fmt="tif")])
+        assert schema.requires_zarr is False
+
+    def test_false_for_ometiff(self):
+        schema = make_schema([image_input(fmt="ometiff")])
+        assert schema.requires_zarr is False
+
+    def test_false_for_png(self):
+        schema = make_schema([image_input(fmt="png")])
+        assert schema.requires_zarr is False
+
+    def test_false_for_no_image_inputs(self):
+        base = load_example()
+        base["inputs"] = [
+            {"id": "x", "type": "float", "value-key": "[X]", "command-line-flag": "--x"}
+        ]
+        schema = WorkflowSchema.model_validate(base)
+        assert schema.requires_zarr is False
+
+    def test_true_for_zarr(self):
+        schema = make_schema([image_input(fmt="zarr")])
+        assert schema.requires_zarr is True
+
+    def test_true_for_omezarr(self):
+        schema = make_schema([image_input(fmt="omezarr")])
+        assert schema.requires_zarr is True
+
+    def test_true_for_ome_zarr_dot(self):
+        schema = make_schema([image_input(fmt="ome.zarr")])
+        assert schema.requires_zarr is True
+
+    def test_true_for_ome_zarr_dash(self):
+        schema = make_schema([image_input(fmt="ome-zarr")])
+        assert schema.requires_zarr is True
+
+    def test_true_for_format_list_containing_zarr(self):
+        schema = make_schema([image_input(fmt=["tif", "zarr"])])
+        assert schema.requires_zarr is True
+
+    def test_true_when_plate_subtype(self):
+        """Plate implies ZARR."""
+        schema = make_schema([image_input(fmt="omezarr", subtype="plate")])
+        assert schema.requires_zarr is True
+
+    def test_false_for_zarr_format_on_non_image_type(self):
+        """format field on a non-image input should not trigger zarr."""
+        base = load_example()
+        base["inputs"] = [
+            {"id": "x", "type": "file", "format": "zarr", "value-key": "[X]", "command-line-flag": "--x"}
+        ]
+        schema = WorkflowSchema.model_validate(base)
+        assert schema.requires_zarr is False
+
+
+# ---------------------------------------------------------------------------
+# requires_plate
+# ---------------------------------------------------------------------------
+
+class TestRequiresPlate:
+    def test_false_by_default(self):
+        schema = make_schema([image_input(fmt="tif", subtype="grayscale")])
+        assert schema.requires_plate is False
+
+    def test_false_for_no_subtype(self):
+        schema = make_schema([image_input(fmt="zarr")])
+        assert schema.requires_plate is False
+
+    def test_true_for_plate_subtype(self):
+        schema = make_schema([image_input(fmt="omezarr", subtype="plate")])
+        assert schema.requires_plate is True
+
+    def test_true_for_plate_in_subtype_list(self):
+        schema = make_schema([image_input(fmt="omezarr", subtype=["plate"])])
+        assert schema.requires_plate is True
+
+    def test_false_for_other_subtype(self):
+        schema = make_schema([image_input(fmt="tif", subtype="grayscale")])
+        assert schema.requires_plate is False
+
+
+# ---------------------------------------------------------------------------
+# Parameter.mode and Parameter.value_choices_labels
+# ---------------------------------------------------------------------------
+
+def param_input(mode=None, choices=None, choice_labels=None) -> dict:
+    """Build a minimal string parameter for injection into a schema."""
+    inp = {
+        "id": "my_param",
+        "type": "string",
+        "name": "My Param",
+        "value-key": "[MY_PARAM]",
+        "command-line-flag": "--my_param",
+    }
+    if mode is not None:
+        inp["mode"] = mode
+    if choices is not None:
+        inp["value-choices"] = choices
+    if choice_labels is not None:
+        inp["value-choices-labels"] = choice_labels
+    return inp
+
+
+class TestParameterMode:
+    def _get_param(self, mode=None):
+        base = load_example()
+        base["inputs"] = [image_input(fmt="tif"), param_input(mode=mode)]
+        schema = WorkflowSchema.model_validate(base)
+        return next(p for p in schema.inputs if p.id == "my_param")
+
+    def test_mode_defaults_to_none(self):
+        assert self._get_param().mode is None
+
+    def test_mode_beginner(self):
+        assert self._get_param(mode="beginner").mode == "beginner"
+
+    def test_mode_advanced(self):
+        assert self._get_param(mode="advanced").mode == "advanced"
+
+    def test_mode_serializes_via_model_dump(self):
+        base = load_example()
+        base["inputs"] = [image_input(fmt="tif"), param_input(mode="advanced")]
+        schema = WorkflowSchema.model_validate(base)
+        dumped = schema.model_dump(by_alias=True)
+        param = next(p for p in dumped["inputs"] if p["id"] == "my_param")
+        assert param["mode"] == "advanced"
+
+
+class TestParameterValueChoicesLabels:
+    def _make(self, choices=None, labels=None):
+        base = load_example()
+        base["inputs"] = [image_input(fmt="tif"),
+                          param_input(choices=choices, choice_labels=labels)]
+        schema = WorkflowSchema.model_validate(base)
+        return next(p for p in schema.inputs if p.id == "my_param")
+
+    def test_value_choices_labels_defaults_to_none(self):
+        param = self._make(choices=["a", "b"])
+        assert param.value_choices_labels is None
+
+    def test_value_choices_labels_set(self):
+        param = self._make(choices=["a", "b"], labels=["Label A", "Label B"])
+        assert param.value_choices_labels == ["Label A", "Label B"]
+
+    def test_value_choices_labels_serializes_via_model_dump(self):
+        base = load_example()
+        base["inputs"] = [image_input(fmt="tif"),
+                          param_input(choices=["a", "b"],
+                                      choice_labels=["Label A", "Label B"])]
+        schema = WorkflowSchema.model_validate(base)
+        dumped = schema.model_dump(by_alias=True)
+        param = next(p for p in dumped["inputs"] if p["id"] == "my_param")
+        assert param["value-choices-labels"] == ["Label A", "Label B"]
+
+    def test_value_choices_labels_none_omitted_in_model_dump(self):
+        base = load_example()
+        base["inputs"] = [image_input(fmt="tif"), param_input(choices=["a"])]
+        schema = WorkflowSchema.model_validate(base)
+        dumped = schema.model_dump(by_alias=True)
+        param = next(p for p in dumped["inputs"] if p["id"] == "my_param")
+        assert param.get("value-choices-labels") is None
+
+    def test_plate_also_sets_zarr(self):
+        """Plate always implies requires_zarr too."""
+        schema = make_schema([image_input(fmt="omezarr", subtype="plate")])
+        assert schema.requires_zarr is True
+        assert schema.requires_plate is True
+
+
+# ---------------------------------------------------------------------------
+# Serialisation — flags appear in model_dump(by_alias=True)
+# ---------------------------------------------------------------------------
+
+class TestSerialisedOutput:
+    def test_keys_present_in_dump(self):
+        schema = make_schema([image_input(fmt="zarr", subtype="plate")])
+        data = schema.model_dump(by_alias=True)
+        assert "requires-zarr" in data
+        assert "requires-plate" in data
+
+    def test_values_correct_in_dump(self):
+        schema = make_schema([image_input(fmt="zarr", subtype="plate")])
+        data = schema.model_dump(by_alias=True)
+        assert data["requires-zarr"] is True
+        assert data["requires-plate"] is True
+
+    def test_false_values_in_dump(self):
+        schema = make_schema([image_input(fmt="tif")])
+        data = schema.model_dump(by_alias=True)
+        assert data["requires-zarr"] is False
+        assert data["requires-plate"] is False
+
+
+# ---------------------------------------------------------------------------
+# Round-trip through example_workflow.json (tiff input → both False)
+# ---------------------------------------------------------------------------
+
+def test_example_workflow_no_zarr():
+    schema = WorkflowSchema.model_validate(load_example())
+    assert schema.requires_zarr is False
+    assert schema.requires_plate is False