Not able to run QuasiFlow

[jpflorido]

Hi,
I'm trying to run QuasiFlow but the following error appears:
Command error:
.command.sh: line 3: trim_galore: command not found

through the following command:
nextflow run ~/.nextflow/assets/AlfredUg/QuasiFlow --reads "$PWD/*_{1,2}.fastq" -profile conda

I'm running with Nextflow version 22.10.7.5853, miniconda latest version. It seems that the conda environment for installing the dependencies is not created and that's the main reason trim_galore is not found.

Any suggestions?
Thanks,
Javier

[AlfredUg]

Hi @jpflorido,
Sure, seems like the conda environment is not created and as such trim_galore is not found. You could try inspecting your conda envs to confirm this. Otherwise, we are hoping to share a link to an updated docker image in the coming few days.